This workflow uses one or more services that are deprecated as of 31st December 2012 (almost 12 years ago), and may no longer function. Show details...

get_compounds_by_pathway

Created: 2008-10-07 16:49:18

Download Workflow

Retrieves all compounds on the specified pathway

Example of input: path:eco00020

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/518/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
pathway_id	path:eco00020

Processors (1)

Name	Type	Description
get_compounds_by_pathway	arbitrarywsdl

Beanshells (0)

Outputs (1)

Name	Description
compounds_id

Links (2)

Source	Sink
pathway_id	get_compounds_by_pathway:pathway_id
get_compounds_by_pathway:return	compounds_id

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Franck Tanoh

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Franck Tanoh

Information Attributions (0)

(Workflows/Files)

None

Information Tags (2)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (1)

Example workflow for KEGG web service

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

2264 viewings

2016 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

get_compounds_by_pathway

Created by Franck Tanoh on Tuesday 07 October 2008 16:49:18 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (93)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Uploader

Paul Fisher

Get Kegg Pathway information (1)

Download

This workflow gets a series of information relating to a list of KEGG pathways supplied to it. It also removes any null values from a list of strings. Example input: path:mmu04010 path:mmu05014

Created: 2010-03-10 | Last updated: 2010-03-10

Credits: Paul Fisher

Taverna 1

Uploader

Paul Fisher

Cow-Human Ortholog Pathways and Gene annot... (2)

Download

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the cow, Bos taurus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. As the Cow genome is currently unfinished, the workflow subsequently maps the cow ensembl gene ids to human orthologues. Entrez and UniProt identifiers are then identified...

Created: 2007-10-03 | Last updated: 2009-12-03