RNAseq_UMG_SDumont_v1
Created: 2020-02-13 18:53:52
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Inputs (1)
Name |
Description |
batch_factors |
runtime parameter for tool DESeq2 |
Steps (11)
Name |
Tool |
Description |
Input dataset collection |
None |
|
Input dataset collection |
None |
|
Sort |
sort1 |
|
Input dataset |
None |
|
Bowtie2 |
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3+galaxy0 |
|
Bowtie2 |
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3+galaxy0 |
|
htseq-count |
toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1 |
|
htseq-count |
toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1 |
|
DESeq2 |
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6 |
|
Filter |
Filter1 |
|
Filter |
Filter1 |
|
Outputs (14)
Name |
Type |
out_file1 |
input |
output |
bam |
output |
bam |
counts |
tabular |
othercounts |
tabular |
counts |
tabular |
othercounts |
tabular |
deseq_out |
tabular |
plots |
pdf |
counts_out |
tabular |
rlog_out |
tabular |
vst_out |
tabular |
out_file1 |
input |
out_file1 |
input |
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