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color_pathway_by_objects

Created: 2008-10-01 17:03:41 Last updated: 2008-10-01 17:06:10

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Color given objects on a pathway map with specified colors and return the URL of the colored image. In the KEGG pathway maps, a gene or enzyme is represented by a rectangle and a compound is shown as a small circle.

Example of input:

pathway_id:
path:eco00260

object_list: (to add as list)
eco:b0514
eco:b2913

fg_color: (to add as list)
blue
orange

bg_color: (to add as list)
red
orange

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Workflow Components

Inputs (4)

Name	Description
pathway_id	path:eco00260
object_list	eco:b0514 eco:b2913
fg_color	#ff0000 #00ff00
bg_color	#ffff00 yellow

Processors (2)

Name	Type	Description
Get_image_from_URL	local
color_pathway_by_objects	arbitrarywsdl

Beanshells (0)

Outputs (2)

Name	Description
URL
image

Links (7)

Source	Sink
bg_color	color_pathway_by_objects:bg_color_list
fg_color	color_pathway_by_objects:fg_color_list
object_list	color_pathway_by_objects:object_id_list
pathway_id	color_pathway_by_objects:pathway_id
color_pathway_by_objects:return	Get_image_from_URL:url
Get_image_from_URL:image	image
color_pathway_by_objects:return	URL

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Franck Tanoh

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Franck Tanoh

Information Attributions (0)

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None

Information Tags (3)

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Information Shared with Groups (0)

None

Information Featured In Packs (1)

Example workflow for KEGG web service

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Information Attributed By (2)

(Workflows/Files)

Information Favourited By (1)

Ian Laycock

Information Statistics

2612 viewings

2204 downloads

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Citations (0)

None

Version History

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color_pathway_by_objects

Created by Franck Tanoh on Wednesday 01 October 2008 17:03:41 (UTC)

Last edited by Franck Tanoh on Wednesday 01 October 2008 17:06:10 (UTC)

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