SImple Europe PMC Search

Created: 2015-12-04 12:24:12

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This very simple workflow searches Europe PMC using the searchPublications Web Service and a conditional XPath to retrieve the article titles for all cited work matching the search query.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
query	A Europe PMC search query.

Processors (6)

Name	Type	Description
searchPublications	wsdl	Wsdl http://www.ebi.ac.uk/europepmc/webservices/soap?wsdl Wsdl Operation searchPublications
searchPublications_input	xmlsplitter
searchPublications_output	xmlsplitter
searchPublications_return	xmlsplitter
records_to_retrieve	stringconstant	Value 100
extract_titles_of_cited_papers	xpath	This conditional XPath extracts the titles for all cited papers. Xpath Expression /resultList/result[citedByCount>0]/title

Beanshells (0)

Outputs (1)

Name	Description
results

Datalinks (7)

Source	Sink
searchPublications_input:output	searchPublications:parameters
query	searchPublications_input:queryString
records_to_retrieve:value	searchPublications_input:pageSize
searchPublications:parameters	searchPublications_output:input
searchPublications_output:return	searchPublications_return:input
searchPublications_return:resultList	extract_titles_of_cited_papers:xml_text
extract_titles_of_cited_papers:nodelist	results

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Information Workflow Type

Taverna 2

Information Uploader

Magnus Palmblad

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

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Magnus Palmblad

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Information Tags (4)

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Information Shared with Groups (1)

Bibliometrics and Scientometrics

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Information Statistics

1656 viewings

968 downloads

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This workflow retrieves bibliographic data for a single author using the PMC Europe RESTful Web service and visualizes the geographic distribution of this author's and their co-authors' geographic distribution using the rworldmap package. This is version 2.0 of this workflow, incorporating changes to the Web service allowing up to 1,000 records to be retrieved at once, using the pageSize parameter.

Created: 2015-08-19 | Last updated: 2015-09-07

Credits: Magnus Palmblad Arzu Tugce Guler

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Uploader

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Get article titles from Europe PMC for sin... (2)

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This small workflow demonstrates how to connect to the new (August 2015) version of Europe PMC (http://europepmc.org/RestfulWebService). Changes from previous versions include the addition of a pageSize parameter, allowing the client to request up to 1,000 records at once. If this would still not be sufficient, the offSet paremeter can be used to retrieve data in chunks of 1,000 records and the Flatten List service used to concatenate the results.

Created: 2015-09-07 | Last updated: 2015-09-10

Credits: Magnus Palmblad

SImple Europe PMC Search

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Workflow Components

Wsdl

Wsdl Operation

Value

Xpath Expression

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Other workflows that use similar services (15)