Get ENSEMBL cross-references for UniProt IDs

Created: 2015-11-16 13:40:48

This small workflow uses the PICR (http://www.ebi.ac.uk/Tools/picr/) WDSL Web Service to look up ENSEMBL (ENSP) cross-references for UniProt IDs. The input is a list of UniProt IDs and the output a corresponding list of ENSEMBL IDs. This instance of the workflow specifically uses the ENSEMBL_HUMAN database and taxonID 9606 (Homo sapiens).

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  • Monday 16 November 2015 13:50:41 (UTC)

    As a comment - the PICR Web service currently (2015-11-16) does not work fully with the XML output splitters in Taverna.




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Workflow EBI_PICR_Sequence_to_ID (1)

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Map a protein sequence to the known identifiers of identical sequences. Uses the EBI's PICR web service (see http://www.ebi.ac.uk/Tools/picr/) to perform the mapping.

Created: 2008-06-08

Credits: User Hamish McWilliam

Workflow EBI PICR, find cross-references for protei... (2)

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Find cross-references (based on 100% sequence identity) for protein accessions from more than 95 distinct databases. For instance input a list of IPI accessions and find cross-references for Swissprot and Ensembl. Mappings can be limited by source database, taxonomic ID and activity status.

Created: 2011-05-18 | Last updated: 2011-05-29

Credits: User Rafael C. Jimenez