Group: Proteomics

News

1. 

   Yassene shared protein_network_2

   Friday 27 November 2015 12:15:14 (UTC)
2. 

   Magnus Palmblad shared Get ENSEMBL cross-references for UniProt IDs

   

   This small workflow uses the PICR ( http://www.ebi.ac.uk/Tools/picr/ ) WDSL Web Service to look up ENSEMBL (ENSP) cross-references for UniProt IDs. The input is a list of UniProt IDs and the output a corresponding list of ENSEMBL IDs. This instance of the workflow specifically uses the ENSEMBL_HUMAN …

   Monday 16 November 2015 13:40:48 (UTC)
3. 

   Magnus Palmblad shared Tutorial_1_solution

   

   Fetch and combine transcriptomics and proteomics data from NSC11 cells in GEO and PRIDE respectively. Apply spectral counting on the proteomics data. The workflow demonstrates how to combine data from different domains (here microarray- based transcriptomics and mass spectrometry-based proteomics) an …

   Wednesday 16 April 2014 14:55:56 (UTC)
4. 

   Magnus Palmblad shared Tutorial_1_start

   

   This partial workflow is the starting point for Taverna tutorial held at the Leiden University Medical Center on April 17, 2014.

   Wednesday 16 April 2014 14:54:09 (UTC)
5. 

   Kate Mostovenko shared Comparison of Peptide and Protein Fractionation Methods

   

   This workflow was used to analyze the data in a manuscript by Mostovenko et al. (2013, submitted), comparing peptide and protein fractionation methods. The workflow identifies proteins by X!Tandem database search and validates the results using PeptideProphet. Additional information such as pI and fr …

   Wednesday 27 March 2013 10:04:23 (UTC)
6. 

   Magnus Palmblad shared de Bruin et al. Workflow 1

   

   This is "Workflow 1" from de Bruin et al., Mol. Cell. Proteomics 2012.

   Wednesday 01 August 2012 08:50:28 (UTC)
7. 

   Kate Mostovenko joined the Proteomics group

   Wednesday 01 August 2012 07:16:35 (UTC)
8. 

   Magnus Palmblad shared Plasma Precipitation Analysis

   

   ABOUT THE WORKFLOW This workflow was used to analyze the data in a manuscript by Mostovenko et al. (2012, submitted), comparing proteins in the precipitate with those left in solution after organic solvent precipitation. However, the workflow is generally applicable in comparisons of any binary fract …

   Tuesday 31 July 2012 16:04:55 (UTC)
9. 

   Magnus Palmblad joined the Proteomics group

   Monday 11 June 2012 16:14:15 (UTC)
10. 

    Yassene created the Proteomics group

    Monday 11 June 2012 15:53:52 (UTC)