Trim Reads Based on Quality
Created: 2015-02-28 16:28:51
Last updated: 2015-02-28 16:28:59
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Workflow Components
Inputs (14)
| Name |
Description |
| Input Dataset |
|
| score_comparison |
runtime parameter for tool FASTQ Quality Trimmer |
| window_size |
runtime parameter for tool FASTQ Quality Trimmer |
| trim_ends |
runtime parameter for tool FASTQ Quality Trimmer |
| aggregation_action |
runtime parameter for tool FASTQ Quality Trimmer |
| quality_score |
runtime parameter for tool FASTQ Quality Trimmer |
| step_size |
runtime parameter for tool FASTQ Quality Trimmer |
| exclude_count |
runtime parameter for tool FASTQ Quality Trimmer |
| max_num_deviants |
runtime parameter for tool Filter FASTQ |
| paired_end |
runtime parameter for tool Filter FASTQ |
| min_size |
runtime parameter for tool Filter FASTQ |
| max_quality |
runtime parameter for tool Filter FASTQ |
| min_quality |
runtime parameter for tool Filter FASTQ |
| max_size |
runtime parameter for tool Filter FASTQ |
Steps (3)
| Name |
Tool |
Description |
| Input dataset |
None |
|
| FASTQ Quality Trimmer |
fastq_quality_trimmer |
|
| Filter FASTQ |
fastq_filter |
|
Outputs (2)
| Name |
Type |
| output_file |
input |
| output_file |
input |
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