Biome-BGC GLUE 1.3

Created: 2014-10-02 10:27:29 Last updated: 2014-10-09 05:30:02

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Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. The model has more than 40 various parameters. The only way to estimate or set these parameters is "calibration" (data-model-harmonization), which demands a hugh amount of computational capacity. Monte Carlo Experiment (MCE) randomizes selected parameters of the model in a high number of replication, which provides pre-process results for Sensitivity Analysis (SA), Data Model Harmonization (DMH), etc ...

The Biome-BGC Sensitivity Analysis (SA) workflow starts an evaluation job on the ECOS server of MTA ÖK, which is based on the results of on a prior Monte Carlo Experiment project. ...

The Biome-BGC Projects database was developed to easy prepare, manage and share all of the above mentioned datasets (files) and provide interaction with Taverna workflows. Learn more about BBGCDB at http://ecos.okologia.mta.hu/bbgcdb/.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (0)

Processors (5)

Name	Type	Description
Interaction	interaction	Interaction Page http://ecos.okologia.mta.hu/bbgcdb/node/add/project7
model_calibration_ws	rest
GetURL	beanshell	Script url="http://ecos.okologia.mta.hu/bbgcdb/node/"+prID;
message	beanshell	Script out1="The Glue project (project id: "+prID+") has been submitted.";
trimID	beanshell	Script out1=id1.trim();

Beanshells (3)

Name	Inputs	Outputs
GetURL	prID	url
message	prID	out1
trimID	id1	out1

Outputs (3)

Name	Description
GLUE_ProjectID	A unique numeric ID to identify the Biome-BGC project run in the BBGC database.
URL	The URL of the Biome-BGC Project database record created by the workflow.
Message	Output message of the workflow about the run.

Datalinks (7)

Source	Sink
Interaction:myOutput	model_calibration_ws:nid
trimID:out1	GetURL:prID
trimID:out1	message:prID
model_calibration_ws:responseBody	trimID:id1
trimID:out1	GLUE_ProjectID
GetURL:url	URL
message:out1	Message

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Information Workflow Type

Taverna 2

Information Uploader

Peter Ittzes

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Information Version 1 (earliest) (of 2)

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Information Shared with Groups (1)

BioVeL internal

Information Featured In Packs (1)

Ecosystem modelling with Biome-BGC

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Information Statistics

2331 viewings

1193 downloads

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Version History

In chronological order:

Biome-BGC Glue test & demo version 1.0 annotated

Created by Peter Ittzes on Thursday 02 October 2014 10:27:27 (UTC)
Biome-BGC GLUE 1.3

Created by Peter Ittzes on Thursday 09 October 2014 05:30:02 (UTC)

Last edited by Peter Ittzes on Friday 12 June 2015 13:39:07 (UTC)