Transcritomics : eQTL after data extraction from ISAtab : step 1 Agilent datasets handling

Created: 2014-03-04 14:15:53 Last updated: 2014-06-10 09:26:08

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Format raw files from Feature extraction output (Agilent array matrix file) to have individual in columns and genes in rows

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Inputs (1)

Name	Description
Array file from Agilent scanner / Feature extraction

Steps (9)

Name	Tool	Description
Input dataset	None
Remove beginning	Remove beginning1
Cut	Cut1
Filter	testtoolshed.g2.bx.psu.edu/repos/greg/gregs_filter/Filter1/3.3.0
Select first	Show beginning1
Cut	Cut1
Select last	Show tail1
Paste	Paste1
Concatenate datasets	cat1

Outputs (8)

Name	Type
out_file1	input
out_file1	tabular
out_file1	input
out_file1	input
out_file1	tabular
out_file1	input
out_file1	input
out_file1	input

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Ylebras

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Ylebras

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Information Statistics

1030 viewings

641 downloads

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Citations (1)

1. Y. Le Bras, A. Roult, C. Monjeaud, M. Bahin, O. Quenez, C. Heriveau, A. Bretaudeau, O. Sallou, O. Collin, Towards a Life Sciences Virtual Research Environment : an e-Science initiative in Western France, JOBIM 2013, 03 July 2013, https://www.e-biogenouest.org/resources/128

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