Retrieve_abstract_from_Medline

Created: 2008-09-17 15:22:56 Last updated: 2008-09-17 15:24:22

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This workflow retrieves Medline Abstracts given PMIDs (PubMed id)

You can use: 9879 as input example to test this workflow

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Workflow Components

Inputs (1)

Name	Description
PubMed_id

Processors (4)

Name	Type	Description
queryPmid	arbitrarywsdl
InputParameters	local
Outputparameters	local
PipelineName	stringconstant	possible values: whatizitSwissprotG2; whatizitChebiDict; whatizitOscars3; whatizitPathwaywiki; whatizitEBIMed; whatizitProteinInteraction; whatizitGORanked; whatizitProteinBiolexHuman; whatizitDisease; whatizitOrganisms; whatizitQbmarsdf; whatizitEBIMedDiseaseChemicals; whatizitSwissprotGo; whatizitChemicalsMeta; whatizitGODict; whatizitProteinInteractionPMID; whatizitChemicals; whatizitSwissprotDisease; whatizitDrugs; whatizitSwissprot.

Beanshells (0)

Outputs (1)

Name	Description
MedlineAbstract

Links (5)

Source	Sink
InputParameters:output	queryPmid:parameters
PubMed_id	InputParameters:pmid
PipelineName:value	InputParameters:pipelineName
Outputparameters:return	MedlineAbstract
queryPmid:parameters	Outputparameters:input

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Information Workflow Type

Taverna 1

Information Uploader

Franck Tanoh

Information License

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Information Version 1 (of 1)

Information Credits (1)

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Franck Tanoh

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Information Statistics

2489 viewings

2239 downloads

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Retrieve_abstract_from_Medline

Created by Franck Tanoh on Wednesday 17 September 2008 15:22:56 (UTC)

Last edited by Franck Tanoh on Wednesday 17 September 2008 15:24:22 (UTC)

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Other workflows that use similar services (1)

Taverna 1

Uploader

Hamish McWilliam

EBI_Whatizit (1)

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Perform a text-mining analysis of an input text document using the EBI's Whatizit tool (http://www.ebi.ac.uk/webservices/whatizit/info.jsf). Whatizit provides a number of text-mining pipelines which can can detect various terms of biological interest in text documents. For example finding gene names and mapping them to UniProtKB identifiers, finding chemical terms and mapping them to ChEBI, etc.

Created: 2008-07-09

Credits: Hamish McWilliam