Retrieve_abstract_from_Medline

Created: 2008-09-17 15:22:56 Last updated: 2008-09-17 15:24:22

Download Workflow

This workflow retrieves Medline Abstracts given PMIDs (PubMed id)

You can use: 9879 as input example to test this workflow

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/394/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
PubMed_id

Processors (4)

Name	Type	Description
queryPmid	arbitrarywsdl
InputParameters	local
Outputparameters	local
PipelineName	stringconstant	possible values: whatizitSwissprotG2; whatizitChebiDict; whatizitOscars3; whatizitPathwaywiki; whatizitEBIMed; whatizitProteinInteraction; whatizitGORanked; whatizitProteinBiolexHuman; whatizitDisease; whatizitOrganisms; whatizitQbmarsdf; whatizitEBIMedDiseaseChemicals; whatizitSwissprotGo; whatizitChemicalsMeta; whatizitGODict; whatizitProteinInteractionPMID; whatizitChemicals; whatizitSwissprotDisease; whatizitDrugs; whatizitSwissprot.

Beanshells (0)

Outputs (1)

Name	Description
MedlineAbstract

Links (5)

Source	Sink
InputParameters:output	queryPmid:parameters
PubMed_id	InputParameters:pmid
PipelineName:value	InputParameters:pipelineName
Outputparameters:return	MedlineAbstract
queryPmid:parameters	Outputparameters:input

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Franck Tanoh

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Franck Tanoh

Information Attributions (0)

(Workflows/Files)

None

Information Tags (3)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (2)

Information Statistics

2489 viewings

2239 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

Retrieve_abstract_from_Medline

Created by Franck Tanoh on Wednesday 17 September 2008 15:22:56 (UTC)

Last edited by Franck Tanoh on Wednesday 17 September 2008 15:24:22 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (1)

Taverna 1

Uploader

Hamish McWilliam

EBI_Whatizit (1)

Download

Perform a text-mining analysis of an input text document using the EBI's Whatizit tool (http://www.ebi.ac.uk/webservices/whatizit/info.jsf). Whatizit provides a number of text-mining pipelines which can can detect various terms of biological interest in text documents. For example finding gene names and mapping them to UniProtKB identifiers, finding chemical terms and mapping them to ChEBI, etc.

Created: 2008-07-09

Credits: Hamish McWilliam