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For Workflow: Find compounds pharmacology and align against target sequences
Find compounds pharmacology and align agai... (1)
Look up concept URI from freetext, e.g. "aspirin", find compound pharmacology and their target info. For each target, blast+tree on its sequence - if any.
Uses the Open PHACTs API https://dev.openphacts.org/docs/alpha and the myExperiment workflow 3369 "Blast_Align_and_Tree" http://www.myexperiment.org/workflows/3369.
Notice that in tihs workflow, most concepts won't have compounds, and most compounds won't have targets, and most targets won't have a sequence - Open PHACT API wise this mean...
Created: 2013-10-16
Credits: Stian Soiland-Reyes Katy Wolstencroft
Attributions: Blast_Align_and_Tree