[untitled]
Created: 2012-09-05 12:10:44
Last updated: 2012-09-05 12:11:02
complete part one of assignment
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Authors (0)
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Inputs (1)
| Name |
Description |
| SNPs_file |
|
Processors (7)
| Name |
Type |
Description |
| query_gene_ID_biomart |
biomart |
|
| SpreadsheetImport |
spreadsheet |
|
| create_gene_list |
localworker |
ScriptString seperatorString = "\n";
if (seperator != void) {
seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
String item = (String) i.next();
sb.append(item);
if (i.hasNext()) {
sb.append(seperatorString);
}
}
concatenated = sb.toString();
|
| biomart_query_all |
biomart |
|
| delete_output_header |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = "\n";
String[] result = string.split(regexString);
split.add(result[1]);
}
|
| Flatten_List |
localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| create_disease_list |
localworker |
ScriptString seperatorString = "\n";
if (seperator != void) {
seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
String item = (String) i.next();
sb.append(item);
if (i.hasNext()) {
sb.append(seperatorString);
}
}
concatenated = sb.toString();
|
Outputs (4)
| Name |
Description |
| biomart_query_all |
|
| gene_id |
|
| merged_output |
|
| disease |
|
Datalinks (11)
| Source |
Sink |
| SpreadsheetImport:A |
query_gene_ID_biomart:hsapiens_snp.snp_filter_filter |
| SNPs_file |
SpreadsheetImport:fileurl |
| query_gene_ID_biomart:hsapiens_snp.ensembl_gene_stable_id |
create_gene_list:stringlist |
| SpreadsheetImport:A |
biomart_query_all:hsapiens_snp.snp_filter_filter |
| biomart_query_all:hsapiens_snp |
delete_output_header:string |
| delete_output_header:split |
Flatten_List:inputlist |
| query_gene_ID_biomart:hsapiens_snp.phenotype_description |
create_disease_list:stringlist |
| biomart_query_all:hsapiens_snp |
biomart_query_all |
| create_gene_list:concatenated |
gene_id |
| Flatten_List:outputlist |
merged_output |
| create_disease_list:concatenated |
disease |
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licensed under:
Version 1
(of 1)
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