Get models from BioModels including the input protein.

Created: 2012-08-22 06:18:53 Last updated: 2012-08-24 02:30:55

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A service to look for models in BioModels using a UniProt accession as input. If the input protein is found in one model the workflow will provide the BioModels Id, the SBML and a link to the BioModels database. Please use taverna 2.4 and above.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
UniProtId	UniProt accession

Processors (3)

Name	Type	Description
getModelsIdByUniprotId	wsdl	Wsdl http://www.ebi.ac.uk/biomodels-main/services/BioModelsWebServices?wsdl Wsdl Operation getModelsIdByUniprotId
getModelSBMLById	wsdl	Wsdl http://www.ebi.ac.uk/biomodels-main/services/BioModelsWebServices?wsdl Wsdl Operation getModelSBMLById
GetBiomodelsUrl	beanshell	Script var BiomodelsUrl = "http://www.ebi.ac.uk/biomodels-main/" + BiomodelsId;

Beanshells (1)

Name	Description	Inputs	Outputs
GetBiomodelsUrl		BiomodelsId	BiomodelsUrl

Outputs (3)

Name	Description
BioModelsIds	List of model identifiers from BioModels
SBML
BioModelsUrl

Datalinks (6)

Source	Sink
UniProtId	getModelsIdByUniprotId:uniprotId
getModelsIdByUniprotId:getModelsIdByUniprotIdReturn	getModelSBMLById:id
getModelsIdByUniprotId:getModelsIdByUniprotIdReturn	GetBiomodelsUrl:BiomodelsId
getModelsIdByUniprotId:getModelsIdByUniprotIdReturn	BioModelsIds
getModelSBMLById:getModelSBMLByIdReturn	SBML
GetBiomodelsUrl:BiomodelsUrl	BioModelsUrl

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Rafael C. Jimenez

Information License

All versions of this Workflow are licensed under:

Information Version 2 (of 3)

Information Credits (1)

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Rafael C. Jimenez

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None

Information Tags (1)

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biomodels

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Information Statistics

2122 viewings

1192 downloads

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Citations (0)

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Version History

In chronological order:

Get models from BioModels including the input protein

Created by Rafael C. Jimenez on Wednesday 22 August 2012 06:18:53 (UTC)

Last edited by Rafael C. Jimenez on Wednesday 22 August 2012 06:19:27 (UTC)
Get models from BioModels including the input protein.

Created by Rafael C. Jimenez on Friday 24 August 2012 02:27:29 (UTC)
Get models from BioModels including the input protein.

Created by Rafael C. Jimenez on Friday 24 August 2012 02:30:55 (UTC)

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Rafael C. Jimenez

Find Biological Models by GO. (1)

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Find Biological Models (Ids and Names) from Biomodels querying by Gene Ontology terms.

Created: 2011-05-29 | Last updated: 2011-05-29

Credits: Rafael C. Jimenez

Taverna 2

Uploader

Rafael C. Jimenez

Get a list of proteins annotated with an O... (3)

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A service to look for models in BioModels using an Ontology Id as input. First the workflow will look in QuickGO for UniProt accessions annotated with the provided Ontology Id. Then it will look for models using the list of proteins. If one of the input protein is found in one model the workflow will provide the BioModels Id, the SBML and a link to the BioModels database. Please use taverna 2.4 or above.

Created: 2012-08-22 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

Get models from BioModels including the input protein.

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Other workflows that use similar services (3)