Get models from BioModels including the input protein.

Created: 2012-08-22 06:18:53 Last updated: 2012-08-24 02:30:55

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Authors (1)

Titles (1)

Descriptions (0)

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Inputs (1)

Name	Description
UniProtId	UniProt accession

Processors (2)

Name	Type	Description
getModelsIdByUniprotId	wsdl	Wsdl http://www.ebi.ac.uk/biomodels-main/services/BioModelsWebServices?wsdl Wsdl Operation getModelsIdByUniprotId
getModelNameById	wsdl	Wsdl http://www.ebi.ac.uk/biomodels-main/services/BioModelsWebServices?wsdl Wsdl Operation getModelNameById

Beanshells (0)

Outputs (2)

Name	Description
BioModelsIds	List of model identifiers from BioModels
BioModelsNames

Datalinks (4)

Source	Sink
UniProtId	getModelsIdByUniprotId:uniprotId
getModelsIdByUniprotId:getModelsIdByUniprotIdReturn	getModelNameById:id
getModelsIdByUniprotId:getModelsIdByUniprotIdReturn	BioModelsIds
getModelNameById:getModelNameByIdReturn	BioModelsNames

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Rafael C. Jimenez

Information License

All versions of this Workflow are licensed under:

Information Version 1 (earliest) (of 3)

Information Credits (1)

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Rafael C. Jimenez

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biomodels

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Information Statistics

2122 viewings

1192 downloads

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Version History

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Get models from BioModels including the input protein

Created by Rafael C. Jimenez on Wednesday 22 August 2012 06:18:53 (UTC)

Last edited by Rafael C. Jimenez on Wednesday 22 August 2012 06:19:27 (UTC)
Get models from BioModels including the input protein.

Created by Rafael C. Jimenez on Friday 24 August 2012 02:27:29 (UTC)
Get models from BioModels including the input protein.

Created by Rafael C. Jimenez on Friday 24 August 2012 02:30:55 (UTC)

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Other workflows that use similar services (3)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Uploader

Rafael C. Jimenez

Find Biological Models by GO. (1)

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Find Biological Models (Ids and Names) from Biomodels querying by Gene Ontology terms.

Created: 2011-05-29 | Last updated: 2011-05-29

Credits: Rafael C. Jimenez

Taverna 2

Uploader

Rafael C. Jimenez

Get a list of proteins annotated with an O... (3)

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A service to look for models in BioModels using an Ontology Id as input. First the workflow will look in QuickGO for UniProt accessions annotated with the provided Ontology Id. Then it will look for models using the list of proteins. If one of the input protein is found in one model the workflow will provide the BioModels Id, the SBML and a link to the BioModels database. Please use taverna 2.4 or above.

Created: 2012-08-22 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

Get models from BioModels including the input protein.

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Workflow Components

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Wsdl

Wsdl Operation

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Other workflows that use similar services (3)