remove_duplicates_full.xml
Created: 2008-07-12 09:55:38
Last updated: 2008-07-12 09:55:52
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Workflow Components
Processors (14)
| Name |
Type |
Description |
| database |
stringconstant |
|
| end |
stringconstant |
|
| array_name |
stringconstant |
|
| split_by_regex1 |
local |
|
| Merge_string_list1 |
local |
|
| start |
stringconstant |
|
| chromosome |
stringconstant |
|
| comma1 |
stringconstant |
|
| regex1 |
stringconstant |
|
| getgenesbyspecies |
soaplabwsdl |
Retrieves a list of Ensembl genes for a given species, chromosome and position |
| probeset_in_qtl |
soaplabwsdl |
Gets the probesets that are in a region of a chromosome e.g. in a QTL or based on 2 marker names |
| probeset_to_gene |
soaplabwsdl |
Gets ENSEMBL gene IDS that are based on the probeset names passed to it |
| Concatenate_two_strings |
local |
|
| Remove_duplicate_strings |
local |
|
Outputs (4)
| Name |
Description |
| probesets_in_qtl |
|
| genes_from_probeset |
|
| genes_in_qtl |
|
| unique_list |
|
Links (25)
| Source |
Sink |
| Concatenate_two_strings:output |
Remove_duplicate_strings:stringlist |
| Merge_string_list1:concatenated |
probeset_to_gene:probeset_list |
| array_name:value |
probeset_in_qtl:array_name |
| chromosome:value |
getgenesbyspecies:chromo |
| chromosome:value |
probeset_in_qtl:chromosome |
| chromosome:value |
probeset_to_gene:chromosome |
| comma1:value |
Merge_string_list1:seperator |
| database:value |
getgenesbyspecies:database |
| database:value |
probeset_in_qtl:database |
| database:value |
probeset_to_gene:database |
| end:value |
getgenesbyspecies:end |
| end:value |
probeset_in_qtl:end |
| end:value |
probeset_to_gene:end |
| getgenesbyspecies:output |
Concatenate_two_strings:string2 |
| probeset_in_qtl:output |
split_by_regex1:string |
| probeset_to_gene:output |
Concatenate_two_strings:string1 |
| Remove_duplicate_strings:strippedlist |
unique_list |
| regex1:value |
split_by_regex1:regex |
| split_by_regex1:split |
Merge_string_list1:stringlist |
| start:value |
getgenesbyspecies:start |
| probeset_in_qtl:output |
probesets_in_qtl |
| probeset_to_gene:output |
genes_from_probeset |
| start:value |
probeset_in_qtl:start |
| start:value |
probeset_to_gene:start |
| getgenesbyspecies:output |
genes_in_qtl |
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