Get Pathway-Genes by Entrez gene id

Wsdl

Wsdl Operation

Wsdl

Wsdl Operation

Wsdl

Wsdl Operation

Script

String[] split = input.split("\n");
Vector nonEmpty = new Vector();

for (int i = 0; i < split.length; i++) 
{		
	String trimmed = split[i].trim();
	nonEmpty.add(trimmed);	
}

String output = "";

for (int i = 0; i < nonEmpty.size(); i++)
{
	output = output + "ncbi-geneid:" + (String) (nonEmpty.elementAt(i) + "\n");
}

Wsdl

Wsdl Operation

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 1; i < result.length; i=i+3) {
		split.add(result[i]);
	}
}

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}

}

Value

Value

Script

filteredlist = new ArrayList();

for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	String[] tokens = item.split(separators);
	filteredlist.add(tokens[1]);
}

Value

Wsdl

Wsdl Operation

Script

if ((url == void) || (url == null)) {
	throw new RuntimeException("The url must be specified");
}

URL inputURL = null;
if (base != void) {
	inputURL = new URL(new URL(base), url);
} else {
	inputURL = new URL(url);
}

int bytesRead = 0;
int totalBytesRead = 0;
InputStream is = inputURL.openStream();
ByteArrayOutputStream os = new ByteArrayOutputStream();
byte[] buffer = new byte[2048];
while (true) {
	bytesRead = is.read(buffer);
	if (bytesRead == -1) {
		break;	
	}

	os.write(buffer, 0, bytesRead);
}

image = os.toByteArray();
is.close();
os.close();