Define Associated Regions and Genes
Created: 2012-02-08 16:08:08
Last updated: 2012-05-09 09:52:18
Download WorkflowDefines regions and genes from associated SNPs
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Workflow Components
Authors (1)
| Paul Martin |
Titles (1)
| Define Associated Regions and Genes |
Descriptions (1)
| Defines regions and genes from associated SNPs |
Dependencies (0)
None
Inputs (1)
| Name | Description |
|---|---|
| parameters | Parameter XML Document |
Processors (28)
| Name | Type | Description |
|---|---|---|
| parseParameters | beanshell |
Scriptimport org.dom4j.Document;
import org.dom4j.Node;
import org.dom4j.Element;
import org.dom4j.io.SAXReader;
String getParameter(Element root, String parameterName) {
List nodeList = root.selectNodes("Parameter[@name='" + parameterName + "']");
if (nodeList.size() == 1) {
Node parameterNode = (Node) nodeList.get(0);
String parameter = "";
if (parameterNode.isTextOnly())
parameter = parameterNode.getText();
else {
List paramElements = parameterNode.elements();
for (int i = 0; i < paramElements.size(); i++) {
parameter += ((Element) paramElements.get(i)).asXML();
}
}
if (parameter == null || parameter.equals(""))
return null;
else
return parameter;
} else if (nodeList.size() > 1) {
throw new Exception("Multiple parameters matching " + parameterName + "!");
}
return null;
}
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
Document document = reader.read(new StringReader(paramXML));
Element root = document.getRootElement();
// Set parameter defaults.
flankingKB = "250";
hapmapPlugin = "LDPhase3Dumper";
hapmapPopulation = "CEU";
hapmapVersion = "hapmap27_B36";
hapmapBuild = "36";
hapmapBaseURL = "http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/";
rsqCutoff = "0.5";
associatedSNPs = new ArrayList();
baseUrl = "http://www.biomart.org";
// Get parameters from XML.
String paramTmp;
// flankingKB.
if ((paramTmp = getParameter(root, "flankingKB")) != null)
flankingKB = paramTmp;
// hapmapPlugin.
if ((paramTmp = getParameter(root, "hapmapPlugin")) != null)
hapmapPlugin = paramTmp;
// hapmapPopulation.
if ((paramTmp = getParameter(root, "hapmapPopulation")) != null)
hapmapPopulation = paramTmp;
// hapmapVersion.
if ((paramTmp = getParameter(root, "hapmapVersion")) != null) {
hapmapVersion = paramTmp;
// hapmapBuild.
paramTmp = getParameter(root, "hapmapBuild");
if (paramTmp == null && ! hapmapVersion.equals("hapmap27_B36")) {
// Get hapmapBuild from version;
int index = hapmapVersion.indexOf("B");
hapmapBuild = hapmapVersion.substring(index + 1);
} else
hapmapBuild = paramTmp;
}
// hapmapBaseURL.
if ((paramTmp = getParameter(root, "hapmapBaseURL")) != null)
hapmapBaseURL = paramTmp;
// rsqCutoff.
if ((paramTmp = getParameter(root, "rsqCutoff")) != null)
rsqCutoff = paramTmp;
// associatedSNPs.
if ((paramTmp = getParameter(root, "associatedSNPs")) != null) {
Document assocSnpDoc = reader.read(new StringReader(paramTmp));
List nodeList = assocSnpDoc.selectNodes(xpath);
for (int i = 0; i < nodeList.size(); i++) {
Node node = (Node) nodeList.get(i);
String xmlVal = node.asXML();
if (xmlVal != null && ! xmlVal.equals(""))
associatedSNPs.add(xmlVal);
}
}
if ((paramTmp = getParameter(root, "alternateGeneServer")) != null) {
if (! paramTmp.equals("") && ! paramTmp.equalsIgnoreCase("false"))
baseUrl = "http://www.ensembl.org";
} |
| associatedSnpXpath | stringconstant |
Value*/AssociatedSNP |
| get_SNPs | workflow | |
| makeLiftOverParamsDbSnpToHapMap | beanshell |
Scriptimport org.dom4j.Element;
import org.dom4j.Node;
import org.dom4j.dom.DOMDocument;
import org.dom4j.Document;
import org.dom4j.io.SAXReader;
// Initialise Reader for associatedSNP XML.
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
// Make new document.
Document doc = new DOMDocument();
// Add root element.
Element rootElement = doc.addElement("Parameters");
// Add associatedSNP.
Document assocSNP = reader.read(new StringReader(associatedSNP));
Element assocSNPRoot = assocSNP.getRootElement();
rootElement.addElement("Parameter")
.addAttribute("name", "xmlIn")
.add(assocSNPRoot);
// Add chainXML.
//Document chainDoc = reader.read(new StringReader(chainXML));
//Element chainRoot = chainDoc.getRootElement();
//rootElement.addElement("Parameter")
// .addAttribute("name", "chainXML")
// .add(chainRoot);
// Add fromBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "fromBuild")
.addText(fromBuild);
// Add toBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "toBuild")
.addText(toBuild);
// Add rootNode.
rootElement.addElement("Parameter")
.addAttribute("name", "rootNode")
.addText("SnpRegion");
xmlParams = doc.asXML(); |
| dbSnpToHapMapChain | workflow | |
| liftoverdbSnpToHapMap | workflow | |
| unifyHapmapBuild | workflow | |
| addLDRegion | beanshell |
Scriptimport org.dom4j.Document;
import org.dom4j.Node;
import org.dom4j.Element;
import org.dom4j.io.SAXReader;
// Initialise Reader
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
// Read document.
Document snpDoc = reader.read(new StringReader(associatedSNP));
Element root = snpDoc.getRootElement();
// Get SnpInfo Node.
Node snpInfoNode = root.selectSingleNode("SnpInfo");
if (snpInfoNode == null) { // Non dbSNP snp.
associatedSNPOut = associatedSNP;
return;
}
// Get rsId and isHapMap attribute.
String rsId = snpInfoNode.attributeValue("rsId");
if (! rsId.startsWith("rs"))
rsId = "rs" + rsId;
boolean isHapMap = Boolean.parseBoolean(snpInfoNode.attributeValue("isHapMap"));
// Check population and flanking.
if (pop.equals(""))
pop = "CEU";
int flanking = Integer.parseInt(flankingKB);
if (flanking == 0)
flanking = 500;
flanking *= 1000;
// Cycle through SnpRegion Nodes, adding LDRegion
// and, where necessary, HapMap parameter information.
List snpRegionNodes = root.selectNodes("SnpRegion");
for (int i = 0; i < snpRegionNodes.size(); i++) {
Node snpRegionNode = (Node) snpRegionNodes.get(i);
String id = snpRegionNode.attributeValue("id");
Node locationNode = snpRegionNode.selectSingleNode("Location[@ucscBuild='" + hapmapBuild + "']");
if (locationNode == null)
continue;
// Get Location info.
String chr = locationNode.attributeValue("chromosome");
if (! chr.startsWith("chr"))
chr = "chr" + chr;
int start = Integer.parseInt(locationNode.attributeValue("start"));
int end = Integer.parseInt(locationNode.attributeValue("end"));
// Add LDRegion Node.
Element ldRegion = root.addElement("LDRegion")
.addAttribute("snpPosition", start + ".." + end)
.addAttribute("id", id);
// Add Location Node.
ldRegion.addElement("Location")
.addAttribute("chromosome", chr)
.addAttribute("start", "" + start)
.addAttribute("end", "" + end)
.addAttribute("ucscBuild", hapmapBuild);
// Add Snps & Location.
for (int j = 5; j > 2; j -= 2) {
Element snp = ldRegion.addElement("Snp" + j)
.addAttribute("rsId", rsId)
.addAttribute("rsq", "1")
.addAttribute("isAssocSNP", "true");
snp.addElement("Location")
.addAttribute("chromosome", chr)
.addAttribute("start", "" + start)
.addAttribute("end", "" + end)
.addAttribute("ucscBuild", hapmapBuild);
}
// Add HapMap params if necessary.
if (isHapMap) {
start = start - flanking < 1 ? 1 : start - flanking;
end = end + flanking;
ldRegion.addElement("HapMap")
.addAttribute("params", "name=" + chr + ":" + start + ".." + end + ";plugin=" + plugin + ";" + plugin + ".pop_code=" + pop + ";plugin_config=1;plugin_action=Go")
.addAttribute("version", hapmapVersion)
.addAttribute("isProcessed", "false");
}
}
associatedSNPOut = snpDoc.asXML(); |
| defineLDRegion | workflow | |
| hotspotBuild | stringconstant |
Valuehg17 |
| HapMapToHotspotChain | workflow | |
| makeLiftOverParamsHapMapToHotspot | beanshell |
Scriptimport org.dom4j.Element;
import org.dom4j.Node;
import org.dom4j.dom.DOMDocument;
import org.dom4j.Document;
import org.dom4j.io.SAXReader;
// Initialise Reader for associatedSNP XML.
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
// Make new document.
Document doc = new DOMDocument();
// Add root element.
Element rootElement = doc.addElement("Parameters");
// Add associatedSNP.
Document assocSNP = reader.read(new StringReader(associatedSNP));
Element assocSNPRoot = assocSNP.getRootElement();
rootElement.addElement("Parameter")
.addAttribute("name", "xmlIn")
.add(assocSNPRoot);
// Add chainXML.
//Document chainDoc = reader.read(new StringReader(chainXML));
//Element chainRoot = chainDoc.getRootElement();
//rootElement.addElement("Parameter")
// .addAttribute("name", "chainXML")
// .add(chainRoot);
// Add fromBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "fromBuild")
.addText(fromBuild);
// Add toBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "toBuild")
.addText(toBuild);
// Add rootNode.
rootElement.addElement("Parameter")
.addAttribute("name", "rootNode")
.addText("LDRegion");
xmlParams = doc.asXML(); |
| liftoverHapMapToHotspot | workflow | |
| getHotspotRegions | workflow | |
| HotspotToHg18Chain | workflow | |
| hg18 | stringconstant |
Valuehg18 |
| HotspotToEnsemblChain | workflow | |
| makeLiftOverParamsHotspotToHg18 | beanshell |
Scriptimport org.dom4j.Element;
import org.dom4j.Node;
import org.dom4j.dom.DOMDocument;
import org.dom4j.Document;
import org.dom4j.io.SAXReader;
// Initialise Reader for associatedSNP XML.
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
// Make new document.
Document doc = new DOMDocument();
// Add root element.
Element rootElement = doc.addElement("Parameters");
// Add associatedSNP.
Document assocSNP = reader.read(new StringReader(associatedSNP));
Element assocSNPRoot = assocSNP.getRootElement();
rootElement.addElement("Parameter")
.addAttribute("name", "xmlIn")
.add(assocSNPRoot);
// Add chainXML.
//Document chainDoc = reader.read(new StringReader(chainXML));
//Element chainRoot = chainDoc.getRootElement();
//rootElement.addElement("Parameter")
// .addAttribute("name", "chainXML")
// .add(chainRoot);
// Add fromBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "fromBuild")
.addText(fromBuild);
// Add toBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "toBuild")
.addText(toBuild);
// Add rootNode.
rootElement.addElement("Parameter")
.addAttribute("name", "rootNode")
.addText("AssociatedRegion");
xmlParams = doc.asXML(); |
| liftoverHotspotToHg18 | workflow | |
| makeLiftOverParamsHotspotToEnsembl | beanshell |
Scriptimport org.dom4j.Element;
import org.dom4j.Node;
import org.dom4j.dom.DOMDocument;
import org.dom4j.Document;
import org.dom4j.io.SAXReader;
// Initialise Reader for associatedSNP XML.
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
// Make new document.
Document doc = new DOMDocument();
// Add root element.
Element rootElement = doc.addElement("Parameters");
// Add associatedSNP.
Document assocSNP = reader.read(new StringReader(associatedSNP));
Element assocSNPRoot = assocSNP.getRootElement();
rootElement.addElement("Parameter")
.addAttribute("name", "xmlIn")
.add(assocSNPRoot);
// Add chainXML.
//Document chainDoc = reader.read(new StringReader(chainXML));
//Element chainRoot = chainDoc.getRootElement();
//rootElement.addElement("Parameter")
// .addAttribute("name", "chainXML")
// .add(chainRoot);
// Add fromBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "fromBuild")
.addText(fromBuild);
// Add toBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "toBuild")
.addText(toBuild);
// Add rootNode.
rootElement.addElement("Parameter")
.addAttribute("name", "rootNode")
.addText("AssociatedRegion");
xmlParams = doc.asXML(); |
| liftoverHotspotToEnsembl | workflow | |
| getEnsemblBiomartBuild | workflow | |
| getAssociatedGenes | workflow | |
| mergeResults | beanshell |
Scriptimport org.dom4j.Element;
import org.dom4j.Node;
import org.dom4j.dom.DOMDocument;
import org.dom4j.Document;
import org.dom4j.io.SAXReader;
// Initialise Reader for associatedSNP XML.
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
// Make new document.
Document doc = new DOMDocument();
// Add root element.
Element rootElement = doc.addElement("AssociatedSNPs");
for (int i = 0; i < xmlResults.size(); i++) {
String xmlResult = (String) xmlResults.get(i);
if (xmlResult == null || xmlResult.equals(""))
continue;
Document assocSNPDoc = reader.read(new StringReader(xmlResult));
Element assocSNPRoot = assocSNPDoc.getRootElement();
rootElement.add(assocSNPRoot.detach());
}
mergedResults = doc.asXML(); |
| makeLiftOverParamsHapMapToEnsembl | beanshell |
Scriptimport org.dom4j.Element;
import org.dom4j.Node;
import org.dom4j.dom.DOMDocument;
import org.dom4j.Document;
import org.dom4j.io.SAXReader;
// Initialise Reader for associatedSNP XML.
SAXReader reader = new SAXReader(false);
reader.setIncludeInternalDTDDeclarations(false);
reader.setIncludeExternalDTDDeclarations(false);
// Make new document.
Document doc = new DOMDocument();
// Add root element.
Element rootElement = doc.addElement("Parameters");
// Add associatedSNP.
Document assocSNP = reader.read(new StringReader(associatedSNP));
Element assocSNPRoot = assocSNP.getRootElement();
rootElement.addElement("Parameter")
.addAttribute("name", "xmlIn")
.add(assocSNPRoot);
// Add chainXML.
//Document chainDoc = reader.read(new StringReader(chainXML));
//Element chainRoot = chainDoc.getRootElement();
//rootElement.addElement("Parameter")
// .addAttribute("name", "chainXML")
// .add(chainRoot);
// Add fromBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "fromBuild")
.addText(fromBuild);
// Add toBuild.
rootElement.addElement("Parameter")
.addAttribute("name", "toBuild")
.addText(toBuild);
// Add rootNode.
rootElement.addElement("Parameter")
.addAttribute("name", "rootNode")
.addText("LDRegion");
xmlParams = doc.asXML(); |
| liftoverHapMapToEnsembl | workflow | |
| HapMapToEnsemblChain | workflow | |
| getEnsemblInfo | workflow |
Beanshells (30)
| Name | Description | Inputs | Outputs |
|---|---|---|---|
| parseParameters |
paramXML xpath |
flankingKB hapmapPlugin hapmapPopulation hapmapVersion hapmapBaseURL rsqCutoff associatedSNPs hapmapBuild baseUrl |
|
| makeLiftOverParamsDbSnpToHapMap |
fromBuild toBuild associatedSNP |
xmlParams | |
| addLDRegion |
associatedSNP hapmapBuild pop flankingKB plugin hapmapVersion |
associatedSNPOut | |
| makeLiftOverParamsHapMapToHotspot |
fromBuild toBuild associatedSNP |
xmlParams | |
| makeLiftOverParamsHotspotToHg18 |
fromBuild toBuild associatedSNP |
xmlParams | |
| makeLiftOverParamsHotspotToEnsembl |
fromBuild toBuild associatedSNP |
xmlParams | |
| mergeResults | xmlResults | mergedResults | |
| makeLiftOverParamsHapMapToEnsembl |
fromBuild toBuild associatedSNP |
xmlParams | |
| parseHapMapData |
assocSNP rsqCutoffString |
assocSNPout | |
| buildXMLQueries |
virtualSchema dataset queries |
xmlQueries | |
| getAssociatedRegionLocations |
associatedXML ensemblBiomartBuild |
queries | |
| createGeneXML |
ensemblBiomartBuild biomartResultsArray |
geneXML | |
| addGenesToAssociatedXML |
associatedXmlIn geneXML ensemblBiomartBuild |
associatedXmlOut | |
| unifyBuild | buildIn |
ncbiBuildOut errorString ucscBuildOut |
|
| liftOver |
xmlIn contiguous minMatch chainXmlString nodesToConvert |
xmlOut | |
| liftOver |
xmlIn contiguous minMatch chainXmlString nodesToConvert |
xmlOut | |
| getChainUrls |
urlTemplate fromBuild toBuild |
chainUrls chainConversions |
|
| getChainXml |
chainUrls chainConversions fromBuild toBuild |
chainXml | |
| unifyBuild | buildIn |
ncbiBuildOut errorString ucscBuildOut |
|
| liftOver |
xmlIn contiguous minMatch chainXmlString nodesToConvert |
xmlOut | |
| Create_and_populate_XML_file | content | filePath | |
| mergeXML |
dbSNP snpXML |
xmlOut rsIds |
|
| addHapMapAttribute |
snpXML hapmapSNPs |
snpXMLOut dbSnpBuild |
|
| createRsXsl | filePath | ||
| getEnsemblInfo |
registryXML baseUrl |
schemaOut | |
| getDataset | datasets | dataset | |
| finishDatasetUrl | baseUrl | url | |
| buildXMLQueries |
rsIds virtualSchema dataset |
xmlQueries | |
| liftOver |
xmlIn contiguous minMatch chainXmlString nodesToConvert |
xmlOut | |
| getHumanBuildFromDatasets | biomartResponse | ncbiBuild |
Outputs (1)
| Name | Description |
|---|---|
| associatedRegionsXML | Output XML Document |
Datalinks (57)
| Source | Sink |
|---|---|
| associatedSnpXpath:value | parseParameters:xpath |
| parameters | parseParameters:paramXML |
| parseParameters:associatedSNPs | get_SNPs:SNPList |
| get_SNPs:output | makeLiftOverParamsDbSnpToHapMap:associatedSNP |
| get_SNPs:build | makeLiftOverParamsDbSnpToHapMap:fromBuild |
| unifyHapmapBuild:ucscBuildOut | makeLiftOverParamsDbSnpToHapMap:toBuild |
| get_SNPs:build | dbSnpToHapMapChain:fromBuild |
| unifyHapmapBuild:ucscBuildOut | dbSnpToHapMapChain:toBuild |
| makeLiftOverParamsDbSnpToHapMap:xmlParams | liftoverdbSnpToHapMap:parameters |
| dbSnpToHapMapChain:chainXML | liftoverdbSnpToHapMap:chainXML |
| parseParameters:hapmapBuild | unifyHapmapBuild:buildIn |
| liftoverdbSnpToHapMap:xmlOut | addLDRegion:associatedSNP |
| unifyHapmapBuild:ucscBuildOut | addLDRegion:hapmapBuild |
| parseParameters:flankingKB | addLDRegion:flankingKB |
| parseParameters:hapmapPopulation | addLDRegion:pop |
| parseParameters:hapmapVersion | addLDRegion:hapmapVersion |
| parseParameters:hapmapPlugin | addLDRegion:plugin |
| addLDRegion:associatedSNPOut | defineLDRegion:associatedSNP |
| parseParameters:hapmapBaseURL | defineLDRegion:baseURL |
| parseParameters:rsqCutoff | defineLDRegion:rsqCutoff |
| hotspotBuild:value | HapMapToHotspotChain:toBuild |
| unifyHapmapBuild:ucscBuildOut | HapMapToHotspotChain:fromBuild |
| hotspotBuild:value | makeLiftOverParamsHapMapToHotspot:toBuild |
| unifyHapmapBuild:ucscBuildOut | makeLiftOverParamsHapMapToHotspot:fromBuild |
| defineLDRegion:AssociatedSNPOut | makeLiftOverParamsHapMapToHotspot:associatedSNP |
| makeLiftOverParamsHapMapToHotspot:xmlParams | liftoverHapMapToHotspot:parameters |
| HapMapToHotspotChain:chainXML | liftoverHapMapToHotspot:chainXML |
| liftoverHapMapToEnsembl:xmlOut | getHotspotRegions:associatedSnp |
| hotspotBuild:value | HotspotToHg18Chain:fromBuild |
| hg18:value | HotspotToHg18Chain:toBuild |
| hotspotBuild:value | HotspotToEnsemblChain:fromBuild |
| getEnsemblBiomartBuild:ucscBuild | HotspotToEnsemblChain:toBuild |
| getHotspotRegions:out | makeLiftOverParamsHotspotToHg18:associatedSNP |
| hg18:value | makeLiftOverParamsHotspotToHg18:toBuild |
| hotspotBuild:value | makeLiftOverParamsHotspotToHg18:fromBuild |
| makeLiftOverParamsHotspotToHg18:xmlParams | liftoverHotspotToHg18:parameters |
| HotspotToHg18Chain:chainXML | liftoverHotspotToHg18:chainXML |
| hotspotBuild:value | makeLiftOverParamsHotspotToEnsembl:fromBuild |
| liftoverHotspotToHg18:xmlOut | makeLiftOverParamsHotspotToEnsembl:associatedSNP |
| getEnsemblBiomartBuild:ucscBuild | makeLiftOverParamsHotspotToEnsembl:toBuild |
| HotspotToEnsemblChain:chainXML | liftoverHotspotToEnsembl:chainXML |
| makeLiftOverParamsHotspotToEnsembl:xmlParams | liftoverHotspotToEnsembl:parameters |
| getEnsemblBiomartBuild:ucscBuild | getAssociatedGenes:ensemblBiomartBuild |
| liftoverHotspotToEnsembl:xmlOut | getAssociatedGenes:AssociatedXML |
| getEnsemblInfo:dataset | getAssociatedGenes:dataset |
| getEnsemblInfo:schema | getAssociatedGenes:virtualSchema |
| parseParameters:baseUrl | getAssociatedGenes:baseUrl |
| getAssociatedGenes:AssociatedXmlOutput | mergeResults:xmlResults |
| getEnsemblBiomartBuild:ucscBuild | makeLiftOverParamsHapMapToEnsembl:toBuild |
| liftoverHapMapToHotspot:xmlOut | makeLiftOverParamsHapMapToEnsembl:associatedSNP |
| unifyHapmapBuild:ucscBuildOut | makeLiftOverParamsHapMapToEnsembl:fromBuild |
| makeLiftOverParamsHapMapToEnsembl:xmlParams | liftoverHapMapToEnsembl:parameters |
| HapMapToEnsemblChain:chainXML | liftoverHapMapToEnsembl:chainXML |
| getEnsemblBiomartBuild:ucscBuild | HapMapToEnsemblChain:toBuild |
| unifyHapmapBuild:ucscBuildOut | HapMapToEnsemblChain:fromBuild |
| parseParameters:baseUrl | getEnsemblInfo:baseUrl |
| mergeResults:mergedResults | associatedRegionsXML |
Coordinations (0)
None
Workflow Type
Version 1 (earliest)
(of 2)
- association
- |
- disease
- |
- disease-associated genes
- |
- ensembl
- |
- gene
- |
- genes
- |
- genome wide association studies
- |
- gwas
- |
- mapping
- |
- ncbi
- |
- ngs
- |
- sequencing
- |
- snp
- |
- ucsc
- association
- |
- disease
- |
- disease-associated genes
- |
- ensembl
- |
- gene
- |
- genes
- |
- genome wide association studies
- |
- gwas
- |
- mapping
- |
- ncbi
- |
- ngs
- |
- sequencing
- |
- snp
- |
- ucsc
Log in to add Tags
Shared with Groups (0)
None
Statistics
Version History
In chronological order:
-
Created by Paul martin on Wednesday 08 February 2012 16:08:08 (UTC)
Last edited by Paul martin on Tuesday 14 February 2012 11:32:10 (UTC)
-
Created by Paul martin on Monday 19 March 2012 11:34:00 (UTC)
Last edited by Paul martin on Wednesday 09 May 2012 09:52:13 (UTC)
Revision comment:Added additional attributes.
Fixed problem with unrecognised SNPs
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