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For Workflow: Get Element ID from Gzipped GenBank file
Get Element ID from Gzipped GenBank file (1)
This workflow gunzips a *.gbk.gz file, converts it to XML (via agavewriter) and finds the Element ID.
Does not work on *.gz files larger than 10MB.
I upped the JVM settings on Taverna to:
<key>VMOptions</key>
<string>-Xmx4096m -XX:MaxPermSize=1024m</string>
Created my own agave.dtd to get the XPath service to work the XML file generated from the Read_GenBank_File service. You will need to ...
Created: 2011-10-06 | Last updated: 2011-10-06
Credits: Mutanthumb Alan Williams