OpenTox Learn and evaluate model

Created: 2011-08-09 14:26:16

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Learns a LoMoGraph model on the TUM servers and evaluates it using 10 fold cross validation.

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Processors (29)

Name	Type	Description
Training_dataset	stringconstant	Value http://apps.ideaconsult.net:8080/ambit2/dataset/587595
Test_dataset	stringconstant	Value http://apps.ideaconsult.net:8080/ambit2/dataset/587599
CDK_service_applied_on_trainset	rest
CDK_params	stringconstant	Value ALL=false&BondCountDescriptor=true&WHIMDescriptor=true&dataset_uri=
Preparation2CallCDKService	localworker	Script output = string1 + string2;
trim_url_CDK_train	beanshell	Script trimmed_url= url.trim();
wait_for_task_CDK_train	rest
CV_service	rest
Concatenate_input_for_CV	localworker	Script output = string1 + string2;
CV_params	stringconstant	Value weka_parameter_string=-W weka.classifiers.functions.LinearRegression -S 0 -R 1.0E-8&prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/671098&num_folds=2&algorithm_uri=http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/LoMoGraphRegression&dataset_uri=
LoMoGraph_service	rest
trim_url_LoMoGraph	beanshell	Script trimmed_url= url.trim();
wait_for_task_LoMoGraph	rest
Apply_model_params	stringconstant	Value threshold=0.25&dataset_uri=
Apply_model_service	rest
Preparation2CallCDKService_Test	localworker	Script output = string1 + string2;
CDK_service_applied_on_testset	rest
trim_url_CDK_test	beanshell	Script trimmed_url= url.trim();
wait_for_task_CDK_test	rest
Concatenate_input_for_prediction	localworker	Script output = string1 + string2;
Concatenate_input_for_LoMoGraph	localworker	Script output = string1 + string2;
LoMoGraph_service_params	stringconstant	Value weka_parameter_string=-W weka.classifiers.functions.LinearRegression -S 0 -R 1.0E-8&minimumClusterSize=20&prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/671098&dataset_uri=
wait_for_task_CDK_Ambit_train	rest
trim_url_Ambit_train	beanshell	Script trimmed_url= url.trim();
trim_url_Ambit_test	beanshell	Script trimmed_url= url.trim();
wait_for_task_CDK_Ambit_test	rest
trim_url_Ambit_train_2	beanshell	Script trimmed_url= url.trim();
trim_url_LoMoGraph_train	beanshell	Script trimmed_url= url.trim();
trim_url_Ambit_test_2	beanshell	Script trimmed_url= url.trim();

Beanshells (8)

Name	Inputs	Outputs
trim_url_CDK_train	url	trimmed_url
trim_url_LoMoGraph	url	trimmed_url
trim_url_CDK_test	url	trimmed_url
trim_url_Ambit_train	url	trimmed_url
trim_url_Ambit_test	url	trimmed_url
trim_url_Ambit_train_2	url	trimmed_url
trim_url_LoMoGraph_train	url	trimmed_url
trim_url_Ambit_test_2	url	trimmed_url

Outputs (7)

Name	Description
debug2
debug1
debug3
debug5
debug4
dubug6
dubug7

Datalinks (38)

Source	Sink
Preparation2CallCDKService:output	CDK_service_applied_on_trainset:inputBody
CDK_params:value	Preparation2CallCDKService:string1
Training_dataset:value	Preparation2CallCDKService:string2
CDK_service_applied_on_trainset:responseBody	trim_url_CDK_train:url
trim_url_CDK_train:trimmed_url	wait_for_task_CDK_train:uri
Concatenate_input_for_CV:output	CV_service:inputBody
CV_params:value	Concatenate_input_for_CV:string1
wait_for_task_CDK_Ambit_train:responseBody	Concatenate_input_for_CV:string2
Concatenate_input_for_LoMoGraph:output	LoMoGraph_service:inputBody
LoMoGraph_service:responseBody	trim_url_LoMoGraph:url
trim_url_LoMoGraph:trimmed_url	wait_for_task_LoMoGraph:uri
Concatenate_input_for_prediction:output	Apply_model_service:inputBody
trim_url_LoMoGraph_train:trimmed_url	Apply_model_service:model_uri
CDK_params:value	Preparation2CallCDKService_Test:string1
Test_dataset:value	Preparation2CallCDKService_Test:string2
Preparation2CallCDKService_Test:output	CDK_service_applied_on_testset:inputBody
CDK_service_applied_on_testset:responseBody	trim_url_CDK_test:url
trim_url_CDK_test:trimmed_url	wait_for_task_CDK_test:uri
Apply_model_params:value	Concatenate_input_for_prediction:string1
trim_url_Ambit_test_2:trimmed_url	Concatenate_input_for_prediction:string2
LoMoGraph_service_params:value	Concatenate_input_for_LoMoGraph:string1
trim_url_Ambit_train_2:trimmed_url	Concatenate_input_for_LoMoGraph:string2
trim_url_Ambit_train:trimmed_url	wait_for_task_CDK_Ambit_train:uri
wait_for_task_CDK_train:responseBody	trim_url_Ambit_train:url
wait_for_task_CDK_test:responseBody	trim_url_Ambit_test:url
trim_url_Ambit_test:trimmed_url	wait_for_task_CDK_Ambit_test:uri
wait_for_task_CDK_Ambit_train:responseBody	trim_url_Ambit_train_2:url
wait_for_task_LoMoGraph:responseBody	trim_url_LoMoGraph_train:url
wait_for_task_CDK_Ambit_test:responseBody	trim_url_Ambit_test_2:url
wait_for_task_CDK_train:status	debug5
wait_for_task_CDK_Ambit_train:status	debug5
wait_for_task_CDK_Ambit_test:status	debug5
CV_service:responseBody	debug2
wait_for_task_LoMoGraph:status	debug1
wait_for_task_CDK_test:status	debug3
Apply_model_service:responseBody	debug4
Apply_model_service:status	dubug6
Apply_model_service:redirection	dubug7

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Information Workflow Type

Taverna 2

Information Uploader

Wicker

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Information Statistics

562 viewings

775 downloads

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OpenTox Learn and evaluate model

Created by Wicker on Tuesday 09 August 2011 14:26:16 (UTC)

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OpenTox Learn and evaluate model

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