Get Molecular Interactions from a PSICQUIC Service

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if ((query == void) || (query == null) || query.equals("")) {
	throw new RunTimeException("port query must have a non-empty value");
} else if((serviceRestUrl == void) || (serviceRestUrl == null) || serviceRestUrl.equals("")) {
	throw new RunTimeException("port serviceRestUrl must have a non-empty value");	
}


String psicquicUrl = serviceRestUrl + "query/" + query + "?firstResult=" + firstResult + "&maxResults=" + maxResults + "&format=" + format;

URL url = new URL (psicquicUrl);

BufferedReader reader = new BufferedReader (new InputStreamReader(url.openStream()));
StringWriter writer = new StringWriter();

char[] buffer = new char[1024];
    while (true) {
        int r = reader.read(buffer);
        if (r <= 0) {
            break;
        }
        writer.write(buffer, 0, r);
    }
reader.close();
outputText = writer.toString();

Name	Description
MIQL_query	The Molecular Interactions Query Language (MIQL) defines a way to allow more powerful and flexible queries by using a specific syntax when doing searches. More information about MIQL in ... http://code.google.com/p/psicquic/wiki/MiqlReference
serviceRestUrl	The location of the web service. Check ... http://code.google.com/p/psicquic/wiki/PsicquicServiceProviders ... to find REST URL addresses for PSICQUIC providers.
maxResults	Integer value that defines the maximum number of interactions to be returned. For instance, a value of maxResults=20 will limit the results to 20 interactions.
firstResult	Integer value that defines the first element to be shown. If the whole result set contains 100 interactions and we use firstResult=40, the first row to be returned will be the 40
format	xml25 (PSI-MIXML 2.5) tab25 (PSI-MITAB 2.5) count (Just the total count)

Name	Description
MolecularInteractions	Molecular Interactions in PSI MI format
psicquicUrl	PSICQUIC URL

Source	Sink
MIQL_query	Get_Molecular_Interactions_PSICQUIC:query
serviceRestUrl	Get_Molecular_Interactions_PSICQUIC:serviceRestUrl
maxResults	Get_Molecular_Interactions_PSICQUIC:maxResults
firstResult	Get_Molecular_Interactions_PSICQUIC:firstResult
format	Get_Molecular_Interactions_PSICQUIC:format
Get_Molecular_Interactions_PSICQUIC:outputText	MolecularInteractions
Get_Molecular_Interactions_PSICQUIC:psicquicUrl	psicquicUrl

Get Molecular Interactions from a PSICQUIC Service

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