Get Molecular Interactions from a PSICQUIC Service

Script

if ((query == void) || (query == null) || query.equals("")) {
	throw new RunTimeException("port query must have a non-empty value");
}
if((serviceRestUrl == void) || (serviceRestUrl == null) || serviceRestUrl.equals("")) {
	throw new RunTimeException("port serviceRestUrl must have a non-empty value");	
}
if((firstResult == void) || (firstResult == null) || firstResult.equals("")) {
	firstResult = "0";	
}
if((maxResults == void) || (maxResults == null) || maxResults.equals("")) {
	maxResults = "1000";	
}
if((format == void) || (format == null) || format.equals("")) {
	format = "tab25";	
}


String psicquicUrl = serviceRestUrl + "query/" + query.replaceAll(" ", "%20").replaceAll("\"","%22") + "?firstResult=" + firstResult + "&maxResults=" + maxResults + "&format=" + format;

URL url = new URL (psicquicUrl);

BufferedReader reader = new BufferedReader (new InputStreamReader(url.openStream()));


StringWriter writer = new StringWriter();

char[] buffer = new char[1024];
    while (true) {
        int r = reader.read(buffer);
        if (r <= 0) {
            break;
        }
        writer.write(buffer, 0, r);
    }
reader.close();
outputText = writer.toString();