EBI_MaxSprout

Created: 2008-06-05 21:44:00 Last updated: 2008-06-06 05:58:16

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Generation of protein backbone and side chain co-ordinates from a C(alpha) trace using the MaxSprout tool. The EBI's WSMaxsprout service (see http://www.ebi.ac.uk/Tools/webservices/services/maxsprout) is used to access the tool.

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Workflow Components

Inputs (2)

Name	Description
PDB_format_coordinates	Input C(alpha) trace in PDB format. Example: PDB:1crn.
Email_address	User e-mail address.

Processors (7)

Name	Type	Description
runMaxsprout	arbitrarywsdl	Submit a MaxSprout job (see http://www.ebi.ac.uk/Tools/webservices/services/maxsprout#runmaxsprout_params_content)
Get_result	arbitrarywsdl	Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/maxsprout#poll_jobid_type)
Job_params	local	Parameters for job.
Contents_list	local	Wrap input data in list.
Input_data	local	Add type to input data.
Unpack_result	local	Unpack byte[] into string.
EBI_MaxSprout_poll_job	workflow	Check job status. Fails if not done.

Beanshells (1)

Name	Description	Inputs	Outputs
Is_done		job_status	is_done

Outputs (1)

Name	Description
MaxSprout_result	MaxSprout backbone and side chain co-ordinates in PDB like format.

Links (9)

Source	Sink
Contents_list:output	runMaxsprout:content
Email_address	Job_params:email
Get_result:output	Unpack_result:bytes
Input_data:output	Contents_list:WSArrayofData
Job_params:output	runMaxsprout:params
PDB_format_coordinates	Input_data:content
runMaxsprout:jobid	EBI_MaxSprout_poll_job:Job_ID
Unpack_result:string	MaxSprout_result
runMaxsprout:jobid	Get_result:jobid

Coordinations (1)

Controller	Target
EBI_MaxSprout_poll_job	Get_result

Information Workflow Type

Taverna 1

Information Uploader

Hamish McWilliam

Information License

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Information Version 1 (earliest) (of 2)

Information Credits (1)

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Hamish McWilliam

Information Attributions (1)

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Structure_or_ID

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Information Featured In Packs (2)

Private pack
EMBL-EBI Web Services (retired)

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Information Statistics

3042 viewings

2375 downloads

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Version History

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EBI_MaxSprout

Created by Hamish McWilliam on Thursday 05 June 2008 21:44:00 (UTC)
EBI_MaxSprout

Created by Hamish McWilliam on Thursday 05 June 2008 21:44:00 (UTC)

Last edited by Hamish McWilliam on Friday 06 June 2008 05:58:16 (UTC)

Revision comment:

Allow structure ID (e.g. PDB:1crn) input as well as structure coordinates in PDB format.

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