Simplify a BLAST text file

Created: 2007-10-03 18:36:06 Last updated: 2009-07-28 13:01:45

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This workflow simplifies a BLAST text file into identifiers, descriptions and values (P, E-values). In order to extract the relevant ids etc. you need to pass the relevant string into the corresponding port, e.g. the default port being used is gi. This has been passed "gi". For any other ports simply pass in the string the SAME as the port name, e.g. seq_id, p, per etc.

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Workflow Components

Inputs (1)

Name	Description
blast_file

Processors (2)

Name	Type	Description
gi_option	stringconstant
blastsimplifier	soaplabwsdl	Simplifies BLAST output for later use

Beanshells (0)

Outputs (1)

Name	Description
simplified_output

Links (3)

Source	Sink
blast_file	blastsimplifier:new_direct_data
gi_option:value	blastsimplifier:gi
blastsimplifier:output	simplified_output

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Taverna 1

Information Uploader

Paul Fisher

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Information Attributed By (1)

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Workflow for Protein Sequence Analysis

Information Favourited By (1)

Ian Laycock

Information Statistics

6023 viewings

5060 downloads

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Simpliy a BLAST text file

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)
Simplify a BLAST text file

Created by Paul Fisher on Wednesday 03 October 2007 18:36:06 (UTC)

Last edited by Paul Fisher on Tuesday 28 July 2009 13:01:46 (UTC)

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