EBI_dbfetch_fetchBatch

Created: 2008-05-31 20:59:46

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From a list of sequence entry identifiers and a database name, fetch the sequences in fasta format using EBI's WSDbfetch service (see http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl).

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Workflow Components

Inputs (2)

Name	Description
ID_list	List of entry identifers from a specific database.
Database	Name of the database to which the identifiers belong. For example "uniprot".

Processors (2)

Name	Type	Description
fetchBatch	arbitrarywsdl	Get a set of database entries (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch#fetchbatch_db_ids_format_style)
Format_list_for_dbfetch	local	Reformat the list of identifiers into a comma-delimited string for use with fetchBatch.

Beanshells (0)

Outputs (1)

Name	Description
Sequences	Set of sequences in fasta format.

Links (4)

Source	Sink
Database	fetchBatch:db
ID_list	Format_list_for_dbfetch:stringlist
Format_list_for_dbfetch:concatenated	fetchBatch:ids
fetchBatch:fetchBatchReturn	Sequences

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Taverna 1

Information Uploader

Hamish McWilliam

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Hamish McWilliam

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3646 viewings

2552 downloads

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EBI_dbfetch_fetchBatch

Created by Hamish McWilliam on Saturday 31 May 2008 20:59:46 (UTC)

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