EBI_InterProScan_with_prompts

Created: 2008-05-31 11:40:34 Last updated: 2011-04-01 08:57:45

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Note: the WSInterProScan web service used by this workflow is no longer available haveing been replaced by the EMBL-EBI's InterProScan (REST) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_rest) and InterProScan (SOAP) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap) web services. Thus the workflow described here no longer works, see the alternative workflows for the InterProScan (SOAP) service for workflows which use the new services.

Run an InterProScan analysis using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). This workflow wraps the EBI_InterProScan workflow to provide a basic user interface which prompts for the required inputs: protien sequence and user e-mail. Other parameters are allowed to default.

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Workflow Components

Inputs (0)

Processors (3)

Name	Type	Description
EBI_InterProScan	workflow	Run an InterProScan analysis of a protein sequence.
Ask_for_email	local	User e-mail address.
Ask_for_sequence	local	Input sequence. Either the actual sequence or an entry identifier in database:identifier form (e.g. uniprot:wap_rat).

Beanshells (1)

Name	Description	Inputs	Outputs
Is_done	Map status codes into true/false is done flag.	job_status	is_done

Outputs (1)

Name	Description
InterProScan_text_result	Tab delimited text InterProScan result.

Links (3)

Source	Sink
Ask_for_email:answer	EBI_InterProScan:Email_address
Ask_for_sequence:answer	EBI_InterProScan:Sequence_or_ID
EBI_InterProScan:InterProScan_text_result	InterProScan_text_result

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Taverna 1

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Hamish McWilliam

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Hamish McWilliam

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EBI_InterProScan

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2344 downloads

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EBI_InterProScan_with_prompts

Created by Hamish McWilliam on Saturday 31 May 2008 11:40:34 (UTC)

Last edited by Hamish McWilliam on Friday 01 April 2011 08:57:45 (UTC)