This workflow uses one or more services that
are deprecated as of 31st December 2012
(almost 12 years ago), and may no longer function.
Show details...
Affected service WSDL:
- http://soap.genome.jp/KEGG.wsdl
Details:
KEGG will be moving from a WSDL/SOAP interface to REST. Details of the new REST services can be found here.
Working examples that use the new REST service can be viewed here, here and here.
Drug Repurposing Targets
Created: 2011-04-01 09:33:13
Last updated: 2011-04-01 09:34:14
No description has been set
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Workflow Components
Authors (0)
Titles (0)
Descriptions (0)
Dependencies (0)
Inputs (3)
Name |
Description |
FileName |
|
GramPositProteomes |
|
InitDrugTargets |
|
Processors (6)
Name |
Type |
Description |
Beanshell_2 |
beanshell |
ScriptString[] seq1 = VariantsInSubject.split("\n");
ArrayList seq3 = Kegg_descriptions;
ArrayList seq4 = pathdescr;
ArrayList seq5 = URL;
ArrayList extra = extrainfo;
fileOut="";
for (int i=0;i<=seq1.length-1;i++){
if(!seq3.get(i).contains("hypothetical")){
if((pathdescr.get(0)).get(i).contains("path:")){
fileOut = fileOut +"gi accesion: "+seq1[i]+"\nKegg ID & Cell. Funct.: "+seq3.get(i)+"\nKEGG "+seq4.get(0).get(i)+"\n"+extra.get(0).get(i);
for(int j=0;j<=seq5.get(i).size()-1;j++){
fileOut = fileOut+"\n-URL:"+seq5.get(i).get(j);
}
fileOut = fileOut+"\n\n";
}
else{
fileOut = fileOut +"gi accession: "+seq1[i]+"\nKegg ID & Cell. Funct.: "+seq3.get(i)+"\n"+extra.get(0).get(i)+"\n\n";
}
}
} |
Write_Text_File |
localworker |
ScriptBufferedWriter out = new BufferedWriter(new FileWriter(outputFile));
out.write(filecontents);
out.close();
outputFile = filecontents;
|
NCBIGitoKeggPathways |
workflow |
|
Beanshell |
beanshell |
ScriptList split = new ArrayList();
String[] result = string.split("\n");
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
|
Workflow1 |
workflow |
|
Workflow62 |
workflow |
|
Beanshells (11)
Name |
Description |
Inputs |
Outputs |
Beanshell_2 |
|
Kegg_descriptions
VariantsInSubject
URL
pathdescr
extrainfo
|
fileOut
|
Beanshell |
|
string
|
split
|
Beanshell |
|
input
|
output
|
Beanshell_2 |
|
input
|
output
|
Beanshell_3 |
|
GOterm
pubmed
|
extrainfo
|
Beanshell_4 |
|
input
|
output
|
remove_Nulls |
|
input
|
output
|
extract_gene_ids |
|
input
|
output
|
remove_nulls_2 |
|
input
|
output
|
add_ncbi_to_string |
|
input
|
output
|
Beanshell |
|
BlastReport
|
filtered
|
Datalinks (12)
Source |
Sink |
NCBIGitoKeggPathways:kegg_descriptions |
Beanshell_2:Kegg_descriptions |
NCBIGitoKeggPathways:pathway_descriptions |
Beanshell_2:pathdescr |
NCBIGitoKeggPathways:URL |
Beanshell_2:URL |
Workflow1:potentialtargets |
Beanshell_2:VariantsInSubject |
Workflow62:extrainfo |
Beanshell_2:extrainfo |
Beanshell_2:fileOut |
Write_Text_File:filecontents |
FileName |
Write_Text_File:outputFile |
Beanshell:split |
NCBIGitoKeggPathways:Gi_numbers |
Workflow1:potentialtargets |
Beanshell:string |
InitDrugTargets |
Workflow1:SubjectURL |
GramPositProteomes |
Workflow1:queryURL |
Workflow1:potentialtargets |
Workflow62:GiNumber |
Coordinations (2)
Controller |
Target |
Beanshell |
NCBIGitoKeggPathways |
Workflow1 |
Beanshell |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
Credits (5)
(People/Groups)
Attributions (0)
(Workflows/Files)
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Shared with Groups (1)
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Attributed By (0)
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Favourited By (0)
No one
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