NCBI Gi to Kegg Pathways

Script

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

Script

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

Script

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

Script

List strippedlist = new ArrayList();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	if (strippedlist.contains(item) == false) {
		strippedlist.add(item);
	}
}

Wsdl

Wsdl Operation

Wsdl

Wsdl Operation

Wsdl

Wsdl Operation

Script

String[] split = input.split("\n");
Vector nonEmpty = new Vector();

for (int i = 0; i < split.length; i++){
   if (!(split[i].equals("")))
   {
       nonEmpty.add(split[i].trim());
   }
}

String[] non_empty = new String[nonEmpty.size()];

for (int i = 0; i < non_empty.length; i ++)
{
   non_empty[i] = nonEmpty.elementAt(i);
}

String output = "";

for (int i = 0; i < non_empty.length; i++)
{
	output = output + (String) (non_empty[i] + "\n");
}

Script

String[] split = input.split("\n");
Vector nonEmpty = new Vector();

for (int i = 0; i < split.length; i++) 
{		
	String trimmed = split[i].trim();
	String[] trimmedSplit = trimmed.split("\t");
	if (trimmedSplit.length > 2)
	{
	    nonEmpty.add(trimmedSplit[1].trim());	
	}
}

String output = "";

for (int i = 0; i < nonEmpty.size(); i++)
{
	output = output + (String) (nonEmpty.elementAt(i) + "\n");
}

Script

String[] split = input.split("\n");
Vector nonEmpty = new Vector();

for (int i = 0; i < split.length; i++){
   if (!(split[i].equals("")))
   {
       nonEmpty.add(split[i].trim());
   }
}

String[] non_empty = new String[nonEmpty.size()];

for (int i = 0; i < non_empty.length; i ++)
{
   non_empty[i] = nonEmpty.elementAt(i);
}

String output = "";

for (int i = 0; i < non_empty.length; i++)
{
	output = output + (String) (non_empty[i] + "\n");
}

Script

String[] split = input.split("\n");
Vector nonEmpty = new Vector();

for (int i = 0; i < split.length; i++) 
{		
	String trimmed = split[i].trim();
	nonEmpty.add(trimmed);	
}

String output = "";

for (int i = 0; i < nonEmpty.size(); i++)
{
	output = output + "ncbi-gi:" + (String) (nonEmpty.elementAt(i) + "\n");
}

Script

URL inputURL = null;
if (base != void) {
	inputURL = new URL(new URL(base), url);
} else {
	inputURL = new URL(url);
}

byte[] contents;
if (inputURL.openConnection().getContentLength() == -1) {
	// Content size unknown, must read first...
	byte[] buffer = new byte[1024];
	int bytesRead = 0;
	int totalBytesRead = 0;
	InputStream is = inputURL.openStream();
	while (bytesRead != -1) {
		totalBytesRead += bytesRead;
		bytesRead = is.read(buffer, 0, 1024);
	}
	contents = new byte[totalBytesRead];
} else {
	contents = new byte[inputURL.openConnection().getContentLength()];
}
int bytesRead = 0;
int totalBytesRead = 0;
InputStream is = inputURL.openStream();
while (bytesRead != -1) {
	bytesRead = is.read(contents, totalBytesRead, contents.length - totalBytesRead);
	totalBytesRead += bytesRead;
	if (contents.length==totalBytesRead) break;
}

image = contents;

Wsdl

Wsdl Operation

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Value

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Value

Wsdl

Wsdl Operation