[deprecated] Simulate SBML-derived ODEs

Created: 2011-01-26 22:10:31 Last updated: 2011-07-20 14:05:59

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Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) ODEs simulation and plotting Web service operations.

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Workflow Components

Inputs (0)

Processors (13)

Name	Type	Description
modelUrl	stringconstant
getModel	local
simTime	stringconstant
simTimepointsNr	stringconstant
string2List	beanshell
timeStrListApend	beanshell
concentrationStr	stringconstant
renameCoordinate	beanshell
OdeSolver	workflow
MathPlot	workflow
timepointsXml2dataXmlList	workflow
filterVariables	local
plotMarkersOpt	stringconstant

Beanshells (3)

Name	Inputs	Outputs
string2List	str	list
timeStrListApend	str	list
renameCoordinate	dataXml oldName newName	renamed

Outputs (3)

Name	Description
timepointsXml
error
plot

Links (18)

Source	Sink
OdeSolver:timepointsXml	timepointsXml2dataXmlList:elementXml
OdeSolver:variablesList	filterVariables:stringlist
concentrationStr:value	renameCoordinate:newName
concentrationStr:value	timeStrListApend:str
filterVariables:filteredlist	renameCoordinate:oldName
filterVariables:filteredlist	string2List:str
getModel:filecontents	OdeSolver:model
modelUrl:value	getModel:fileurl
plotMarkersOpt:value	MathPlot:optionList
string2List:list	timepointsXml2dataXmlList:valNameListList
timepointsXml2dataXmlList:dataXmlList	renameCoordinate:dataXml
MathPlot:plots	plot
OdeSolver:error	error
OdeSolver:timepointsXml	timepointsXml
renameCoordinate:renamed	MathPlot:dataXmlList
simTime:value	OdeSolver:simt
simTimepointsNr:value	OdeSolver:simtp
timeStrListApend:list	MathPlot:axisList

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Taverna 1

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trybik

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trybik

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Information Statistics

1702 viewings

1493 downloads

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[deprecated] Simulate SBML-derived ODEs

Created by trybik on Wednesday 26 January 2011 22:10:31 (UTC)

Last edited by trybik on Wednesday 20 July 2011 14:05:59 (UTC)

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