InterProScan (SOAP)

Created: 2010-12-03 08:20:21 Last updated: 2013-03-28 12:46:15

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Perform an InterProScan search using the EMBL-EBIâ€™s InterProScan (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap). The query sequence to use is the input, the other parameters for the search are allowed to default.

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Workflow Components

Inputs (2)

Name	Description
Email	Valid e-mail address for submission.
Sequence	Query protein sequence to be processed by InterProScan. Can be either a sequence in any common format (fasta format recommended) or a database entry identifier in DB:ID format (e.g. UNIPROT:WAP_RAT).

Processors (13)

Name	Type	Description
run	arbitrarywsdl	Submit an analysis job
parametersXML	local
parametersXML1	local
parametersXML2	local
getResult	arbitrarywsdl	Get a job result formatted using a particular renderer
parametersXML3	local
parametersXML4	local
Byte___to_String	local
Byte___to_String1	local
getResult1	arbitrarywsdl	Get a job result formatted using a particular renderer
parametersXML5	local
parametersXML6	local
Job_status	workflow

Beanshells (1)

Name	Description	Inputs	Outputs
is_running		status	is_running

Outputs (4)

Name	Description
JobId	Job identifier for InterProScan job.
Job_status	Job status. Indicates if job completed successfully or failed, see http://www.ebi.ac.uk/Tools/webservices/tutorials/01_intro#jdispatcher.
Tab_result	Plain text tab-delimited InterProScan result.
XML_result	XML InterProScan result.

Links (18)

Source	Sink
Email	parametersXML:email
Sequence	parametersXML1:sequence
Byte___to_String1:string	XML_result
Byte___to_String:string	Tab_result
Job_status:Status	Job_status
getResult1:parameters	parametersXML6:input
getResult:parameters	parametersXML4:input
parametersXML1:output	parametersXML:parameters
parametersXML2:jobId	Job_status:JobId
parametersXML2:jobId	parametersXML3:jobId
parametersXML2:jobId	parametersXML5:jobId
parametersXML3:output	getResult:parameters
parametersXML4:output	Byte___to_String:bytes
parametersXML5:output	getResult1:parameters
parametersXML6:output	Byte___to_String1:bytes
parametersXML2:jobId	JobId
parametersXML:output	run:parameters
run:parameters	parametersXML2:input