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Retrieve a protein from the GPCRDB

Created: 2010-08-24 13:37:05      Last updated: 2010-08-24 13:42:54

This small workflow illustrates how to use the web service access provided by the GPCRDB in Taverna.

The proteinId input field is case sensitive and by default the identifiers in the GPCRDB are lowercase. You can try this mini-workflow with e.a. 'adrb2_human'.

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Taverna 2

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Avatar Nl Bas Vroling

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  1. Retrieve a protein from the GPCRDB

    Created by Bas Vroling on Tuesday 24 August 2010 13:37:05 (UTC)

    Last edited by Bas Vroling on Tuesday 24 August 2010 13:42:54 (UTC)



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Workflow Other workflows that use similar services (2)

Taverna 2
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Avatar Nl Bas Vroling

Workflow BLAST against the GPCRDB (1)

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With this workflow you can submit a BLAST query to the GPCRDB. Input requires a sequence with amino acids only.

Created: 2010-08-24 | Last updated: 2010-08-24

Credits: User Bas Vroling

Taverna 2
Uploader
Avatar Nl Bas Vroling

Workflow Create custom-made GPCR alignments (1)

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This workflow allows you to create your own GPCR alignments. The alignments are built from the residues that are annotated with the general residue numbers. Alignments are therefore not built using standard alignment algorithms but are created by selecting residues that are likely to share the same position in the three-dimensional structure. Users can select the proteins and residue positions that should be aligned, allowing for the creation of e.g. an alignment of all binding pocket residue...

Created: 2010-08-24 | Last updated: 2010-08-24

Credits: User Bas Vroling

Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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