Source |
Sink |
GetPathways:pathway_desc |
merge_pathway_desc:stringlist |
GetPathways:pathway_genes |
merge_genes_pathways:stringlist |
GetPathways:pathway_ids |
merge_pathway_list_1:stringlist |
Kegg_gene_ids:return |
concat_kegg_genes:string1 |
Kegg_gene_ids_2:return |
concat_kegg_genes:string2 |
REMOVE_NULLS_2:output |
add_uniprot_to_string:input |
add_ncbi_to_string:output |
Kegg_gene_ids_2:string |
add_uniprot_to_string:output |
Kegg_gene_ids:string |
chromosome |
btaurus_gene_ensembl:btaurus_gene_ensembl.chromosome_name_filter |
end_position |
btaurus_gene_ensembl:btaurus_gene_ensembl.end_filter |
kegg_pathway_release:value |
binfo:db |
merge_entrez_genes:concatenated |
remove_Nulls:input |
merge_genes_pathways:concatenated |
merge_genes_pathways_2:stringlist |
merge_genes_pathways_2:concatenated |
merge_genes_pathways_3:stringlist |
merge_pathway_desc:concatenated |
remove_pathway_nulls:input |
merge_pathway_list_1:concatenated |
merge_pathway_list_2:stringlist |
merge_pathway_list_2:concatenated |
remove_pathway_nulls_2:input |
merge_uniprot_ids:concatenated |
REMOVE_NULLS_2:input |
regex_2:value |
split_for_duplicates:regex |
remove_Nulls:output |
add_ncbi_to_string:input |
remove_duplicate_kegg_genes:strippedlist |
merge_kegg_references:stringlist |
start_position |
btaurus_gene_ensembl:btaurus_gene_ensembl.start_filter |
btaurus_gene_ensembl:btaurus_gene_ensembl.chromosome_name |
create_report:chromosome_name |
btaurus_gene_ensembl:btaurus_gene_ensembl.end_position |
create_report:end_position |
btaurus_gene_ensembl:btaurus_gene_ensembl.ensembl_gene_id |
compara_btau_hsap_orthologs:compara_btau_hsap_orthologs.btau_ensembl_gene_id_filter |
btaurus_gene_ensembl:btaurus_gene_ensembl.ensembl_gene_id |
create_report:ensembl_gene_id |
btaurus_gene_ensembl:btaurus_gene_ensembl.ensembl_transcript_id |
create_report:ensembl_transcript_id |
btaurus_gene_ensembl:btaurus_gene_ensembl.external_gene_id |
create_report:external_gene_id |
btaurus_gene_ensembl:btaurus_gene_ensembl.start_position |
create_report:start_position |
compara_btau_hsap_orthologs:compara_btau_hsap_orthologs.hsap_gene_stable_id |
hsapiens_gene_ensembl:hsapiens_gene_ensembl.ensembl_gene_id_filter |
concat_kegg_genes:output |
split_for_duplicates:string |
create_report:result |
merge_reports:stringlist |
gene_descriptions:return |
merge_gene_desc:stringlist |
merge_gene_desc:concatenated |
remove_nulls_3:input |
remove_duplicate_kegg_genes:strippedlist |
split_gene_ids:input |
remove_entrez_duplicates:strippedlist |
merge_entrez_genes:stringlist |
binfo:return |
kegg_pathway_release |
getcurrentdatabase:output |
ensembl_database_release |
hsapiens_gene_ensembl:hsapiens_gene_ensembl.entrezgene |
remove_entrez_duplicates:stringlist |
hsapiens_gene_ensembl:hsapiens_gene_ensembl.uniprot_swissprot_accession |
remove_uniprot_duplicates:stringlist |
merge_genes_pathways_3:concatenated |
merged_pathways |
merge_kegg_references:concatenated |
kegg_external_gene_reference |
merge_reports:concatenated |
report |
remove_desc_gaps:output |
gene_descriptions |
remove_nulls_3:output |
gene_descriptions |
remove_uniprot_duplicates:strippedlist |
merge_uniprot_ids:stringlist |
species:value |
getcurrentdatabase:species |
split_for_duplicates:split |
remove_duplicate_kegg_genes:stringlist |
split_gene_ids:output |
GetPathways:gene_ids |
split_gene_ids:output |
gene_descriptions:string |
remove_pathway_nulls:output |
pathway_descriptions |
remove_pathway_nulls_2:output |
pathway_ids |
Comments (1)
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Do you have some kind of description and sample input data for this workflow..? :-)