Who is Dr Labrie according to Pubmed publication queried with a cognoscope ?
Created: 2010-07-08 07:18:09
Last updated: 2010-07-08 07:32:26
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Authors (1)
Titles (1)
Who is Dr Labrie according to Pubmed publication queried with a cognoscope ? |
Descriptions (2)
To use this wokflow you need to import services from |
To use this wokflow you need to import services from
http://proxy.bio2rdf.org/bio2rdf/services.txt
you can explore the loaded data at
http://proxy.bio2rdf.org/fct |
Dependencies (0)
Inputs (3)
Name |
Description |
query |
|
number_of_publication |
|
graph |
|
Processors (15)
Name |
Type |
Description |
LocalHost_Clear_Graph |
wsdl |
Wsdlhttp://fbelleau.users.bio2rdf.org/bio2rdf/services.txtWsdl OperationLocalHost_Clear_Graph |
Bio2RDF_SearchNS |
wsdl |
Wsdlhttp://fbelleau.users.bio2rdf.org/bio2rdf/services.txtWsdl OperationBio2RDF_SearchNS |
String_constant_2 |
stringconstant |
Valueentrez:pubmed |
String_constant_3 |
stringconstant |
Valueselect distinct (bif:replace(?pubmed,'entrez:','')) where { graph {[] ?pubmed} } LIMIT |
LocalHost_SPARQL_Select |
wsdl |
Wsdlhttp://fbelleau.users.bio2rdf.org/bio2rdf/services.txtWsdl OperationLocalHost_SPARQL_Select |
Split_string_into_string_list_by_regular_expression |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
String_constant_4 |
stringconstant |
Value(?m)\t\n |
Bio2RDF_Resource |
wsdl |
Wsdlhttp://fbelleau.users.bio2rdf.org/bio2rdf/services.txtWsdl OperationBio2RDF_Resource |
Bio2RDF_LinksNS |
wsdl |
Wsdlhttp://fbelleau.users.bio2rdf.org/bio2rdf/services.txtWsdl OperationBio2RDF_LinksNS |
String_constant_5 |
stringconstant |
Valueentrez:pubmed |
Get_Web_Page_from_URL |
localworker |
ScriptURL inputURL = null;
if (base != void) {
inputURL = new URL(new URL(base), url);
}
else {
inputURL = new URL(url);
}
URLConnection con = inputURL.openConnection();
InputStream in = con.getInputStream();
InputStreamReader isr = new InputStreamReader(in);
Reader inReader = new BufferedReader(isr);
StringBuffer buf = new StringBuffer();
int ch;
while ((ch = inReader.read()) > -1) {
buf.append((char)ch);
}
inReader.close();
contents = buf.toString();
//String NEWLINE = System.getProperty("line.separator");
//
//URL inputURL = null;
//if (base != void) {
// inputURL = new URL(new URL(base), url);
//} else {
// inputURL = new URL(url);
//}
//StringBuffer result = new StringBuffer();
//BufferedReader reader = new BufferedReader(new InputStreamReader(inputURL.openStream()));
//String line = null;
//while ((line = reader.readLine()) != null) {
// result.append(line);
// result.append(NEWLINE);
//}
//
//contents = result.toString();
|
String_constant_6 |
stringconstant |
Valuehttp://proxy.bio2rdf.org/bio2rdf/reindex |
String_constant_7 |
stringconstant |
Value select ?s2 as ?c1 count (*) as ?c2 where { ?s1 ?s1textp ?o1 . ?o1 bif:contains '"pubmed"' .?s1 a . ?s1 ?s2 . } group by ?s2 order by desc 2 |
Concatenate_two_strings |
localworker |
Scriptoutput = string1 + string2; |
LocalHost_SPARQL_Select_2 |
wsdl |
Wsdlhttp://fbelleau.users.bio2rdf.org/bio2rdf/services.txtWsdl OperationLocalHost_SPARQL_Select |
Outputs (8)
Name |
Description |
o1 |
|
o2 |
|
o3 |
|
o4 |
|
o5 |
|
o6 |
|
o7 |
|
o8 |
|
Datalinks (24)
Source |
Sink |
graph |
LocalHost_Clear_Graph:graph |
String_constant_2:value |
Bio2RDF_SearchNS:namespace |
query |
Bio2RDF_SearchNS:query |
graph |
Bio2RDF_SearchNS:graph |
Concatenate_two_strings:output |
LocalHost_SPARQL_Select:sparql_select_query |
LocalHost_SPARQL_Select:CallReturn |
Split_string_into_string_list_by_regular_expression:string |
String_constant_4:value |
Split_string_into_string_list_by_regular_expression:regex |
Split_string_into_string_list_by_regular_expression:split |
Bio2RDF_Resource:bmuri |
graph |
Bio2RDF_Resource:graph |
Split_string_into_string_list_by_regular_expression:split |
Bio2RDF_LinksNS:bmuri |
String_constant_5:value |
Bio2RDF_LinksNS:namespace |
graph |
Bio2RDF_LinksNS:graph |
String_constant_6:value |
Get_Web_Page_from_URL:url |
String_constant_3:value |
Concatenate_two_strings:string1 |
number_of_publication |
Concatenate_two_strings:string2 |
String_constant_7:value |
LocalHost_SPARQL_Select_2:sparql_select_query |
LocalHost_Clear_Graph:CallReturn |
o1 |
Bio2RDF_SearchNS:CallReturn |
o2 |
LocalHost_SPARQL_Select:CallReturn |
o3 |
Split_string_into_string_list_by_regular_expression:split |
o4 |
Bio2RDF_Resource:CallReturn |
o5 |
Bio2RDF_LinksNS:CallReturn |
o6 |
Get_Web_Page_from_URL:contents |
o7 |
LocalHost_SPARQL_Select_2:CallReturn |
o8 |
Coordinations (5)
Controller |
Target |
Get_Web_Page_from_URL |
LocalHost_SPARQL_Select_2 |
Bio2RDF_LinksNS |
Get_Web_Page_from_URL |
Bio2RDF_SearchNS |
LocalHost_SPARQL_Select |
Bio2RDF_Resource |
Get_Web_Page_from_URL |
LocalHost_Clear_Graph |
Bio2RDF_SearchNS |
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License
All versions of this Workflow are
licensed under:
Version 2 (latest)
(of 2)
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