Fetch PDB flatfile from RCSB server
Created: 2008-01-25 11:52:38
Last updated: 2008-03-05 16:11:13
Download WorkflowGiven aPDB identifier such as '1crn', this workflow fetches the PDB format flatfile from the RCSB
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http://myexperiment.org/workflows/133/download?version=1
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It would be good to have some sort of md5 check - because when you use batch downloads, sometimes you can have network problems and not be aware of it.
Also, you can save the date of the download and the version of pdb database, to make the experiment easier to reproduce.
Also, it could give an error message when the pdb protein doesnt' exists (e.g. un-existing ids, keywords, etc..)
I agree with Giovanni on the error message / early failure. Still, something like this workflow should be immediately available at startup of Taverna. The novice Taverna user should not need to despair over not finding such basic routines. Same for sequences.
No idea if this already worked for Taverna 1.7 but for 2.x I am definitely missing an example value for the input port, i.e. 1crn.