This workflow uses one or more services that
are deprecated as of 31st December 2012
(almost 12 years ago), and may no longer function.
Show details...
Affected service WSDL:
- http://soap.genome.jp/KEGG.wsdl
Details:
KEGG will be moving from a WSDL/SOAP interface to REST. Details of the new REST services can be found here.
Working examples that use the new REST service can be viewed here, here and here.
Parts 4-6
Created: 2010-03-18 12:39:55
Last updated: 2010-03-18 12:40:43
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Workflow Components
Authors (0)
Titles (1)
Descriptions (0)
Dependencies (0)
Inputs (3)
| Name |
Description |
| known_drug_targets_list |
|
| input_sequences |
|
| drug_target_minimum_similarity |
|
Processors (8)
| Name |
Type |
Description |
| 6_Kegg_pathway_diagrams_with_enzymes_coloured_on_path_diagram |
workflow |
|
| 4_5_Find_potential_drug_targets |
workflow |
|
| pass_protein_id_if_similar_to_a_drug_target |
beanshell |
Scriptif (((ArrayList)targets).size() > 0) {
protein_id_out = protein_desc.split("\n")[0];
} |
| fg_color_value |
stringconstant |
Valueblack |
| bg_color_value |
stringconstant |
Valuegreen |
| Concatenate_two_strings |
localworker |
Scriptoutput = string1 + string2; |
| Namespace |
stringconstant |
ValueUniProt |
| convert_to_kegg_id |
workflow |
|
Beanshells (6)
| Name |
Description |
Inputs |
Outputs |
| pass_protein_id_if_similar_to_a_drug_target |
|
protein_desc
targets
|
protein_id_out
|
| insert_query_seq |
|
fasta
MergeString
|
result
|
| extract_number_sequences |
|
insertSeq
|
result
|
| Extract_Seq_Description |
|
Sequences
|
result
|
| Alignment_thresholder |
|
stringlist
regex
group
minscore
|
filteredlist
|
| addIDtotarget |
|
identifiers
targets
regex
group
|
filteredlist
|
Outputs (5)
| Name |
Description |
| kegg_image_url |
|
| potential_drug_targets |
|
| alignments |
|
| image_alignments |
|
| kegg_image |
|
Datalinks (17)
| Source |
Sink |
| fg_color_value:value |
6_Kegg_pathway_diagrams_with_enzymes_coloured_on_path_diagram:fg_color |
| bg_color_value:value |
6_Kegg_pathway_diagrams_with_enzymes_coloured_on_path_diagram:bg_color |
| convert_to_kegg_id:kegg_id |
6_Kegg_pathway_diagrams_with_enzymes_coloured_on_path_diagram:gene_ids |
| known_drug_targets_list |
4_5_Find_potential_drug_targets:drug_list |
| input_sequences |
4_5_Find_potential_drug_targets:Input_Sequences |
| drug_target_minimum_similarity |
4_5_Find_potential_drug_targets:similarity_threshold |
| 4_5_Find_potential_drug_targets:Protein_Desc |
pass_protein_id_if_similar_to_a_drug_target:protein_desc |
| 4_5_Find_potential_drug_targets:Targets |
pass_protein_id_if_similar_to_a_drug_target:targets |
| 4_5_Find_potential_drug_targets:Targets |
Concatenate_two_strings:string2 |
| 4_5_Find_potential_drug_targets:Protein_Desc |
Concatenate_two_strings:string1 |
| Namespace:value |
convert_to_kegg_id:namespace |
| pass_protein_id_if_similar_to_a_drug_target:protein_id_out |
convert_to_kegg_id:id |
| 6_Kegg_pathway_diagrams_with_enzymes_coloured_on_path_diagram:keggimageurl |
kegg_image_url |
| Concatenate_two_strings:output |
potential_drug_targets |
| 4_5_Find_potential_drug_targets:Alignment |
alignments |
| 4_5_Find_potential_drug_targets:Image_Alignment |
image_alignments |
| 6_Kegg_pathway_diagrams_with_enzymes_coloured_on_path_diagram:coloured_images |
kegg_image |
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