t_tp53_mutations_info_by_morpho - "in progress"
Created: 2010-02-09 13:45:16
Last updated: 2010-06-04 08:22:15
No description has been set
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Workflow Components
Processors (29)
| Name |
Type |
Description |
| String_Constant2 |
stringconstant |
|
| String_Constant3 |
stringconstant |
|
| dataset |
stringconstant |
|
| query_field |
stringconstant |
|
| Split_string_2 |
local |
|
| Remove_duplicate_strings |
local |
|
| Filter_list_3 |
local |
|
| Filter_list_1 |
local |
|
| Filter_list_2 |
local |
|
| Split_string_ |
local |
|
| Split_string_1 |
local |
|
| Filter_list_ |
local |
|
| filter_list1 |
beanshell |
|
| filter_list |
beanshell |
|
| count |
workflow |
Simple workflow to count the number of items in a list; |
| count1 |
workflow |
Simple workflow to count the number of items in a list; |
| R_topo |
workflow |
It plots the distribution. |
| R_type |
workflow |
It plots the distribution. |
| R_effect |
workflow |
It plots the distribution. |
| R_exon |
workflow |
It plots the distribution. |
| R_codons |
workflow |
It plots the distribution. |
| getP53_Mutations |
soaplabwsdl |
Get tp53 gene mutations by ids from TP53 IARC database (see http://srs.o2i.it/srs71/) |
| getP53_Ids |
soaplabwsdl |
Get tp53 ids by field label from one of the IARC TP53 databases (see srs.o2i.it/srs71/) |
| getP53_Intron |
soaplabwsdl |
Get any tp53 field value starting by another field value choosen from one of the IARC TP53 databases (see srs.o2i.it/srs71/) |
| getP53_Topography |
soaplabwsdl |
Get any tp53 field value starting by another field value choosen from one of the IARC TP53 databases (see srs.o2i.it/srs71/) |
| getP53_Effect |
soaplabwsdl |
Get any tp53 field value starting by another field value choosen from one of the IARC TP53 databases (see srs.o2i.it/srs71/) |
| getP53_Codons |
soaplabwsdl |
Get any tp53 field value starting by another field value choosen from one of the IARC TP53 databases (see srs.o2i.it/srs71/) |
| getP53_Mut_Type |
soaplabwsdl |
Get any tp53 field value starting by another field value choosen from one of the IARC TP53 databases (see srs.o2i.it/srs71/) |
| getP53_Exon |
soaplabwsdl |
Get any tp53 field value starting by another field value choosen from one of the IARC TP53 databases (see srs.o2i.it/srs71/) |
Beanshells (4)
| Name |
Description |
Inputs |
Outputs |
| CountListElements |
|
list
|
count
|
| CountListElements |
|
list
|
count
|
| filter_list1 |
|
inputs
|
result
|
| filter_list |
|
inputs
|
result
|
Outputs (34)
| Name |
Description |
| Som_Mut_IDs |
|
| Codons_num |
|
| c1 |
|
| c2 |
|
| o |
|
| mut |
|
| Codons_distr |
|
| Codons_log |
|
| Codons_summ |
|
| hist |
|
| pie |
|
| bar |
|
| test |
|
| test2 |
|
| type |
|
| effect |
|
| intron |
|
| exon |
|
| Exons_distr |
|
| Exons_log |
|
| Exons_summ |
|
| exons_bar |
|
| exons_pie |
|
| exons_hist |
|
| topo_bar |
|
| topo_pie |
|
| filt_type |
|
| bar_type |
|
| pie_type |
|
| type_list |
|
| topo_list |
|
| effect_pie |
|
| effect_bar |
|
| effect_list |
|
Links (69)
| Source |
Sink |
| Filter_list_1:filteredlist |
R_codons:i |
| Filter_list_2:filteredlist |
R_topo:i |
| Remove_duplicate_strings:strippedlist |
count:list |
| Split_string_1:split |
Filter_list_:stringlist |
| Split_string_1:split |
count1:list |
| Split_string_2:split |
Filter_list_2:stringlist |
| Split_string_:split |
Filter_list_1:stringlist |
| Split_string_:split |
Remove_duplicate_strings:stringlist |
| String_Constant2:value |
Split_string_1:regex |
| String_Constant2:value |
Split_string_2:regex |
| String_Constant2:value |
Split_string_:regex |
| String_Constant3:value |
Filter_list_:regex |
| dataset:value |
getP53_Codons:dataset |
| dataset:value |
getP53_Ids:dataset |
| dataset:value |
getP53_Topography:dataset |
| query |
getP53_Codons:query |
| query |
getP53_Ids:query |
| Filter_list_3:filteredlist |
R_exon:i |
| Filter_list_:filteredlist |
getP53_Effect:query |
| Filter_list_:filteredlist |
getP53_Exon:query |
| Filter_list_:filteredlist |
getP53_Intron:query |
| Filter_list_:filteredlist |
getP53_Mut_Type:query |
| Filter_list_:filteredlist |
getP53_Mutations:id |
| filter_list1:result |
R_effect:i |
| filter_list:result |
R_type:i |
| getP53_Codons:result |
Split_string_:string |
| getP53_Effect:result |
filter_list1:inputs |
| getP53_Exon:result |
Filter_list_3:stringlist |
| getP53_Ids:result |
Split_string_1:string |
| getP53_Mut_Type:result |
filter_list:inputs |
| getP53_Topography:result |
Split_string_2:string |
| query |
getP53_Topography:query |
| Filter_list_2:filteredlist |
test2 |
| Filter_list_:filteredlist |
o |
| R_codons:DistributionPlot |
Codons_distr |
| R_codons:LogPlot |
Codons_log |
| R_codons:PointList |
Codons_summ |
| R_codons:bar |
bar |
| R_codons:hist |
hist |
| R_codons:pie |
pie |
| R_effect:bar |
effect_bar |
| R_effect:n_list |
effect_list |
| R_effect:pie |
effect_pie |
| R_exon:DistributionPlot |
Exons_distr |
| R_exon:LogPlot |
Exons_log |
| R_exon:PointList |
Exons_summ |
| R_exon:bar |
exons_bar |
| R_exon:hist |
exons_hist |
| R_exon:pie |
exons_pie |
| R_topo:bar |
topo_bar |
| R_topo:n_list |
topo_list |
| R_topo:pie |
topo_pie |
| R_type:bar |
bar_type |
| R_type:n_list |
type_list |
| R_type:pie |
pie_type |
| count1:count |
c2 |
| count:count |
c1 |
| filter_list:result |
filt_type |
| query_field:value |
getP53_Codons:field |
| query_field:value |
getP53_Ids:field |
| query_field:value |
getP53_Topography:field |
| getP53_Codons:result |
Codons_num |
| getP53_Effect:result |
effect |
| getP53_Exon:result |
exon |
| getP53_Ids:result |
Som_Mut_IDs |
| getP53_Intron:result |
intron |
| getP53_Mut_Type:result |
type |
| getP53_Mutations:result |
mut |
| getP53_Topography:result |
test |
Coordinations (7)
| Controller |
Target |
| getP53_Codons |
getP53_Topography |
| getP53_Topography |
getP53_Ids |
| getP53_Topography |
getP53_Mut_Type |
| getP53_Mut_Type |
getP53_Effect |
| getP53_Intron |
getP53_Exon |
| getP53_Effect |
getP53_Intron |
| getP53_Exon |
getP53_Mutations |
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License
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licensed under:
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(of 1)
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