User: Vilija Lomeikaite

Name: Vilija Lomeikaite

Joined: Tuesday 21 August 2018 10:28:12 (UTC)

Last seen: Wednesday 29 August 2018 16:02:12 (UTC)

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Location: Glasgow, United Kingdom

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Field/Industry: Human Genetics

Occupation/Role(s): PhD student

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University of Glasgow

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Vilija Lomeikaite

Human MSH3 exon 1 variant genotyping (1)

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This workflow is designed to genotype 9 bp tandem repeat region in MSH3 exon 1 as well as flanking variants described in Flower and Lomeikaite et al. (2018). Detailed description as follows:1. Input files.Input files for the workflow are demultiplexed fastq files from MiSeq Illumina sequencing. 2. Read merging.To enable obtaining haplotype information, forward and reverse paired-end reads are merged using Pear with default settings. 3. Demultiplexing.Merged reads are demul...

Created: 2018-08-22 | Last updated: 2018-08-22

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