User: Y. Hoogstrate


Name: Y. Hoogstrate

Joined: Friday 19 August 2016 07:19:13 (UTC)

Email (public): Not specified

Website: Not specified

Location: Not specified

Y. Hoogstrate has been credited 1 time

Y. Hoogstrate has an average rating of:

0.0 / 5

(0 ratings in total)

for their items

Description/summary not set

Other contact details:

Not specified


Not specified

Field/Industry: Not specified

Occupation/Role(s): Not specified


Not specified

Note: some items may not be visible to you, due to viewing permissions.

Workflow VCaP RNA-Seq Fusion gene detection with ST... (1)

The end-to-end workflow starts by obtaining paired-end RNA-Seq data of the VCaP cell line via EGA. Galaxy determines the file type automatically with its built-in format detection system. The reads will be clipped before an alignment with STAR and STAR produces several output files that can be used for different analysis. The last tool is STAR-Fusion which was able to confirm the TMPRSS2-ERG fusion gene. 

Created: 2016-08-31 | Last updated: 2016-08-31

Credits: User Y. Hoogstrate

What is this?

Linked Data

Non-Information Resource URI:

Alternative Formats