User: Youguruozhu

Name: Youguruozhu

Joined: Thursday 22 January 2009 21:02:43 (UTC)

Last seen: Monday 23 February 2009 21:50:25 (UTC)

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BioExtract Server

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Youguru...

SH2 domain screen in homo (1)

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You can now Download this Workflow and import it into BioExtract Server at bioextract.org. This workflow retrieves a set of protein sequences containing SH2 domain in homo sapiens from NCBI GenBank Protein, then extracts the sequences of SH2 regions and performs a multiple alignment using EMMA and ClustalW. The alignment by EMMA is then plotted to PNG images, simultaneously creating a frequency matrix by prophecy. Finally scan a protein sequence queried with the frequency matrix using prophet.

Created: 2009-02-19 | Last updated: 2009-06-08

Credits: Youguruozhu

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