User: David De Roure

Name: David De Roure

Joined: Saturday 21 July 2007 07:26:51 (UTC)

Last seen: Thursday 11 April 2019 07:12:39 (UTC)

Email (public): david.deroure [at] oerc.ox.ac.uk

Website: http://www.oerc.ox.ac.uk/people/dder

Location: Oxford, United Kingdom

34 Friends

8 Groups (admin)

7 Groups (member)

21 Files

80 Packs

12 Workflows

7 Favourites

David De Roure has been credited 27 times

David De Roure has an average rating of:

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Dave De Roure is a Professor of e-Research in the Oxford e-Research Centre and National Strategic Director for e-Social Science. Closely involved in the UK e-Science programme, his projects draw on Web 2.0, Semantic Web, workflow and pervasive computing technologies and he focuses on the co-evolution of digital technologies and research methods in and between multiple disciplines. These include digital humanities (computational musicology), social sciences (social statistics), chemistry (smart labs), bioinformatics (in silico experimentation) and environmental science (sensor networks). He has an extensive background in Web and Linked Data, runs the myExperiment.org social website and is a Web Science champion for the Web Science Trust.

See my blog on http://blog.openwetware.org/eresearch/

ORIC ID http://orcid.org/0000-0001-9074-3016

Other contact details:

ORCID ID http://orcid.org/0000-0001-9074-3016

Interests:

Not specified

Field/Industry: e-Research

Occupation/Role(s): Director of Oxford e-Research Centre

Organisation(s):

University of Oxford

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Galaxy

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David De Roure

RTTS Mapper (1)

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Generates RTTS counts file from SAM file. Output consists of three columns: counts at given position;chromosome;position(0 based). Workflow removes untemplated nucleotides from 5' ends of the reads. Authors: Jeppe Vinther, Lukasz Kielpinski Workflow published by lukaszkielpinski on Galaxy Jun 26, 2012 imported to myExperiment Jul 17, 2012 during demonstration of Galaxy-myExperiment integration (specifically generating SVG and showing steps of more complex workflow).

Created: 2012-07-17 | Last updated: 2012-07-17

Galaxy

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David De Roure

Transform 'Stitch Gene blocks' FASTA block... (1)

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Converts FASTA blocks to a FASTA file. Workflow published by galaxyproject on Galaxy Jun 27, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration https://main.g2.bx.psu.edu/u/galaxyproject/w/transform-stitch-gene-blocks-fasta-blocks-to-standardized-fasta-file

Created: 2012-07-16 | Last updated: 2012-07-16

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David De Roure

Basic Illumina Reads Quality (Functional G... (1)

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From the RNA-Seq analysis tutorial during the Functional Genomics Workshop 2012 https://caps.osu.edu/pfg-workshop Workflow published by mejia-guerra on Galaxy Jun 22, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration

Created: 2012-07-16 | Last updated: 2012-07-16

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David De Roure

Basic RNA-Seq Analysis - Differential Expr... (1)

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Created: 2012-07-16 | Last updated: 2012-07-16

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David De Roure

AnnotationTimes (1)

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This very simple workflow was used in the analysis of the metadata produced by the human annotation phase of the SALAMI (Strucural Analysis of Large Amounts of Music Inforamtion) project. The input data is the metadata available from http://ddmal.music.mcgill.ca/salami/annotations It produces a histogram of song durations and scatterplot of combined annotation time verus song duration. The fields are SONG_ID Un...

Created: 2012-07-16 | Last updated: 2012-07-16

PDF

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David De Roure

test (1)

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No description

Created: 2011-03-20

Credits: David De Roure

SPARQL

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David De Roure

list of names of Taverna workflow contribu... (1)

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Paste into http://rdf.myexperiment.org/sparql/

Created: 2011-03-13

Credits: David De Roure

SPARQL

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David De Roure

Tag Metadata (2)

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SPARQL query to show tag creator and creation time

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: David De Roure

SPARQL

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David De Roure

Similar Workflows (1)

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SPARQL query to to test for workflows that should be attributed or may just be copies of earlier workflows. Use with rdf.myexperiment.org

Created: 2010-07-09

Credits: David De Roure David R Newman Danius Michaelides

Excel 2007 Macro-Enabled Workbook

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David De Roure

Demo of statistics webservice invoked from... (1)

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This "spreadflow" was created by searching Seekda for a statistics webservice, adding it using "Web Services References" in Excel, and creating a simple VBA module to implement the corresponding Excel functions (sum, average, standard deviation etc) . The module simply gathers data from the cells to build an array of doubles that can be passed to the webservice. For more details about adding webservices to Excel see the inchidemo workflow http://www.myexperiment.org/workf...

Created: 2009-03-29

Credits: David De Roure

Excel 2007 Macro-Enabled Workbook

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David De Roure

Demo of ChemSpider InChi to SMILES webserv... (1)

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This demo was created in Excel 2007, with the Office XP Webservices toolkit. Using the spreadsheet, the formula InChiToSMILES invokes the corresponding ChemSpider web service. How I made this: 1. Installed Office XP Webservices toolkit from the Microsoft Download Center. 2. In Excel 2007 I turned on the Developer tab (hit Office button, then Excel options). 3. In the Developer ribbon I selected Visual Basic 4. In Tools->Web Services References I selected Web Service URL and ente...

Created: 2009-03-28 | Last updated: 2009-03-28

Credits: David De Roure

Taverna 1

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David De Roure

Fetch Dragon images from BioMoby v2 (2)

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demonstration to ISSGC07

Created: 2007-10-03

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Linked Data

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