User: Gregg Iceton


Name: Gregg Iceton

Joined: Thursday 11 March 2010 11:51:34 (UTC)

Last seen: Wednesday 06 October 2010 18:02:42 (UTC)

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Gregg Iceton has been credited 2 times

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Workflow Compare two genomes for similarity (4)

This workflow takes the file path to two genome nucleotide files in fasta format and requests a minimum similarity required from the user.  The genomes are aligned according to the M-GCAT algorithm ( and the genome similarity parsed out of the resultant log file.  Output is either 0 (genome similarity less than required similarity) or 1 (genome similarity equal to or greater than the required similarity). NB - The file p...

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: User Gregg Iceton


Workflow Kegg pathway diagrams (missing part 3) (2)

Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram. Colour all enzyme boxes with colours specified. This workflow still has one problem. The list of colours have to be specified. I would like ideally to only except one background and one foreground colour and expand that to a list with length equivalent to the number of enzymes found - just duplicating the specified colours. However with almost no Taverna documentation to speak of, none of...

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: User Gregg Iceton

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