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George Kargas

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Batch Predict_Property Analysis for Protein Sequences

Created: 2024-12-17 12:29:43

Credits: George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the execution of Predict_Property, a tool for analyzing specific properties of protein sequences, on multiple FASTA input files. Predict_Property can be downloaded from this github repository https://github.com/realbigws/Predict_Property. The script is tailored for batch processing of large datasets, ensuring efficient execution and organized output management.

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George Kargas

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Batch Phobius Analysis for Protein Sequences

Created: 2024-12-17 12:26:51

Credits: George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the process of running Phobius, a tool for predicting signal peptides and transmembrane (TM) domains in protein sequences, on multiple input FASTA files. The script is particularly useful for large-scale bioinformatics projects where analyzing numerous protein datasets is required.

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George Kargas

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BLASTP Analysis Pipeline Script

Created: 2024-12-17 12:23:59 | Last updated: 2024-12-17 12:32:28

Credits: George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This script processes multiple protein FASTA (.faa) files through BLASTP, comparing them against a specified BLAST database (like nr) to identify species-specific genes.

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