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User: Amrish Mahes

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Name: Amrish Mahes

Joined: Monday 24 February 2014 17:33:22 (UTC)

Last seen: Monday 30 June 2014 09:05:45 (UTC)

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7 Files

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Amrish Mahes has been credited 13 times

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Blob example output of the concept profile generation pip...

Created: 2014-06-26 14:52:48

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an example output the workflow "Concept Profile Generation Pipeline" produces when the input for the thesaurus is the thesaurus example in the workflow itself and the abstract input is from the SQL file named "example standard input for Concept Profile Generation Pipeline". This SQL file needs to be run in a SQL program with a pre-created database/schema called mydb. It produces 5 tables. These consists out of the co-occurrence, occurrence, unce...

File type: Trident (Package)

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Blob example standard input for Concept Profile Generatio...

Created: 2014-06-26 14:36:00

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a SQL file containing example standard input values for testing the concept profile generation pipeline. Run this SQL file in your SQL program with a pre-created database/schema named mydb. It will insert 1 table called abstracts with 10 abstracts and their pubmed id. The workflow will use this table as input for finding concept occurrences. 

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Blob standaard output uncertainty coefficient

Created: 2014-04-30 13:50:23

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Excel workbook

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Blob standaard output occurence

Created: 2014-04-30 13:50:05

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Excel workbook

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Blob standaard output inner product

Created: 2014-04-30 13:49:45

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Excel workbook

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Blob standaard output co occurence

Created: 2014-04-30 13:49:28

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Excel workbook

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Blob standaard_output_files_big_table

Created: 2014-04-30 13:49:04

Credits: User Amrish Mahes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Excel workbook

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Workflow

Taverna 2
Uploader
Avatar Amrish Mahes

Workflow CPGP Summary table (2)

Thumb
Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow

Taverna 2
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Avatar Amrish Mahes

Workflow CPGP Concept matching calculation with inn... (2)

Thumb
Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow

Taverna 2
Uploader
Avatar Amrish Mahes

Workflow Concept profile calculation CPGP (2)

Thumb
Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow

Taverna 2
Uploader
Avatar Amrish Mahes

Workflow CPGP 2x2 Contingency table (3)

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Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow

Taverna 2
Uploader
Avatar Amrish Mahes

Workflow CPGP Peregrine Get Abstracts Create tables (3)

Thumb
Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow

Taverna 2
Uploader
Avatar Amrish Mahes

Workflow Concept Profile Generation Pipeline (9)

Thumb
Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-04-30 | Last updated: 2014-06-15

Credits: User Amrish Mahes

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