User: Paolo

Name: Paolo

Joined: Wednesday 30 January 2008 15:25:36 (UTC)

Last seen: Wednesday 23 October 2013 16:11:28 (UTC)

Email (public): pmissier [at] cs.man.ac.uk

Website: http://www.cs.man.ac.uk/~pmissier/

Location: Manchester, United Kingdom

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13 Files

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11 Workflows

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Paolo has been credited 23 times

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Data and metadata management, data and information quality

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Occupation/Role(s): Not specified

Organisation(s):

University of Manchester, School of Computer Science

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input to eSC-T-1 workflow

Created: 2011-02-25 09:00:00 | Last updated: 2011-02-25 09:00:01

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Paolo

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The Janus provenance ontology

Created: 2010-07-08 18:35:49 | Last updated: 2010-07-08 18:35:50

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Trident (Package)

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Paolo

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OPM graph in RDF format for PC1_B workflow with same...

Created: 2010-06-25 01:10:59

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

this version of the OPM graph includes URLs to each of the data files, which have been uploaded to an ftp server so they can be shared.

File type: RDF data

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Paolo

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OPM graph in RDF format for PC1_B workflow (mockup)

Created: 2010-06-21 16:18:25 | Last updated: 2010-06-21 16:18:26

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: RDF data

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OPM graph in RDF format for PC1_A workflow (mockup)

Created: 2010-06-21 16:16:53 | Last updated: 2010-06-21 16:16:54

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: RDF data

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Paolo

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OPM provenance graph for one run of the workflow

Created: 2010-06-21 16:15:21

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: RDF data

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Paolo

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OPM graph in XML format for PC1_B workflow (mockup)

Created: 2010-06-21 09:50:57

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Paolo

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OPM graph in XML format for PC1_A workflow (mockup)

Created: 2010-06-21 09:45:21 | Last updated: 2010-06-21 09:45:22

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Paolo

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Janus provenance graph (RDF)

Created: 2010-06-08 23:02:53 | Last updated: 2010-06-09 22:48:46

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RDF instance file containing the entire provenance graph for once run of the PC1 mockup workflow. The RDF graph complies with the Janus ontology, which can be viewed here Caveat: implementation still under testing, file may still contain bugs

File type: RDF data

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Paolo

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test inputs for mockup version of PC1 workflow

Created: 2010-05-28 07:24:31 | Last updated: 2010-05-28 07:25:55

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Paolo

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EDBT Provenance talk presentation - PFD version

Created: 2010-03-26 14:01:00 | Last updated: 2010-03-26 14:02:09

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

PDF version -- see related pack for Native Keynote link to paper link to conference proceedings

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provenance talk

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Paolo

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GeoClouds workshop talk

Created: 2009-09-18 13:58:14

Credits: Paolo David De Roure Carole Goble David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Indianapolis, IN, Sept 17, 2009 www.dataandsearch.org/dsi/events/geoclouds.html

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myexperiment researchobjects

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Paolo

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Provenance DB dump to be used as a reference

Created: 2009-09-10 14:18:23

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

this dump contains the provenance for 2 runs of this workflow: www.myexperiment.org/workflows/908

File type: Chemistry Plan

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provenancetesting

Workflow

Taverna 2

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Paolo

Provenance Challenge 1 workflow part B -- ... (1)

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Created: 2010-06-21 | Last updated: 2010-06-21

Credits: Paolo

Workflow

Taverna 2

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Paolo

Provenance Challenge 1 workflow part A -- ... (1)

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Created: 2010-06-21 | Last updated: 2010-06-21

Credits: Paolo

Workflow

Taverna 2

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Paolo

Provenance Challenge 1 workflow -- mockup ... (1)

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simulates the image processing for the PC1 workflow using beanshell that simply track test strings an image is a pair (header, image) specified as a list of depth 1: [header,image] so each processor with image input takes an input list. Note that the processors are designed to operate on single images (except softmean that operates on a list of images), but because the initial input is a list of images, all are processed by implicit iteration.

Created: 2010-05-28

Credits: Paolo

Workflow

Taverna 2

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Paolo

myFirstLinearDataflow (1)

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Created: 2010-04-12

Credits: Paolo

Workflow

Taverna 2

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Paolo

example of a 2-deep nested workflow (1)

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used for testing provenance as well as experimenting with Scufl2 specfications

Created: 2009-09-11

Credits: Paolo

Workflow

Taverna 2

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Paolo

Workflow for provenance testing -- example 1 (1)

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this simply includes a few beanshells and is used for testing our provenance capture and query algorithms

Created: 2009-09-10

Credits: Paolo

Workflow

Taverna 2

Uploader

Stian Soiland-Reyes

EBI_InterProScan for Taverna 2 (2)

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Perform an InterProScan analysis of a protein sequence using the EBIâ€™s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2010-01-26 | Last updated: 2010-01-26

Credits: Stian Soiland-Reyes Paolo Katy Wolstencroft Hamish McWilliam

Attributions: EBI InterproScan T2 EBI_InterProScan

Workflow

Taverna 2

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Paolo

KEGG Gene IDs to KEGG Pathways (1)

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this is a simplified version of Paul's workflow (linked?) that is designed to be provenance-friendly

Created: 2009-06-04 | Last updated: 2010-01-07

Credits: Paolo

Attributions: Pathways and Gene annotations for QTL region

Workflow

Taverna 2

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Paolo

Taverna rendering of the PAN-STARRS workfl... (1)

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Example inputs: CSVRootPath = /Users/paolo/Documents/myGRID/OPM/PC3/SampleData/J062941 JobID:J062941

Created: 2009-04-30

Credits: Paolo

Workflow

Taverna 2

Uploader

Stian Soiland-Reyes

EBI_InterProScan for Taverna 2 (2)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to t...

Created: 2010-01-26 | Last updated: 2010-11-24

Credits: Stian Soiland-Reyes Katy Wolstencroft Paolo Hamish McWilliam

Attributions: EBI_InterProScan for Taverna 2 EBI InterproScan T2 EBI_InterProScan EBI InterProScan

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Linked Data

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