User: Andrew Gibson

Name: Andrew Gibson

Joined: Tuesday 24 July 2007 10:17:42 (UTC)

Last seen: Wednesday 27 January 2010 09:08:34 (UTC)

Email (public): gibson [at] uva.nl

Website: Not specified

Location: Amsterdam, Netherlands

15 Friends

1 Group (admin)

5 Groups (member)

1 Workflows

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Andrew Gibson has been credited 3 times

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My background is in biology, and I am now mostly interested in developing emerging technologies from computer science and trying to make them more accessible to scientists, and as such am interested in what myExperiment is doing.

Other contact details:

Not specified

Interests:

Bioinformatics
OWL Ontology Development
Semantic Web
e-Science

Field/Industry: Academia

Occupation/Role(s): Postdoctoral Researcher

Organisation(s):

University of Amsterdam

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Katy Wolstencroft

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The Data Playground: An Intuitive Workflow Specifica...

Created: 2008-06-02 14:46:40

Credits: Katy Wolstencroft Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!

File type: Adobe PDF

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Workflow

Taverna 1

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Marco Roos

BioAID_EnirchBioModelWithProteinsFromText (7)

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This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you. Summary This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps: it retrieves documents relevant for the query string i...

Created: 2009-05-16 | Last updated: 2009-05-16

Credits: Marco Roos Sophia katrenko Andrew Gibson M. Scott Marshall Willem van Hage Edgar Martijn Schuemie AID

Workflow

Taverna 1

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Andrew Gibson

Extract lists from a tab-delimited spreads... (1)

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This workflow takes a spreadsheet exported as a tab delimited file, such as an Excel spreadsheet. The style is expected as a matrix of data with the first row containing the column names and the first column containing the row names (see below). The top left cell is discarded. The workflow outputs three lists. A list of column names, a list of row names, and a two deep list of data points. The first list is a list of the rows and the sublist is a list of values of the cells from the columns....

Created: 2008-10-17 | Last updated: 2008-10-18

Credits: Andrew Gibson

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