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Workflow
extractGInumber
(1)
This workflow uses regex pattern to compare the identity percentage of each hits against the input sequnece and return the whole information of the hits and the GI number of them (if they including the GI number as a sub information)
inputfileURL: the location of the Gi number
outputText : the list of all the hits and the GI number of them
Created: 2012-05-04
| Last updated: 2012-05-04
Credits:
BioCo Consultants
Workflow
filterDifferenceInLists
(1)
This workflow output a list of the protein or any string hits in the first list but not in the second list.
output : output file location
com : comparision protein list
our : interested protein list
out1: output as a string
Created: 2012-05-04
| Last updated: 2012-05-04
Credits:
BioCo Consultants
Workflow
ConcatStringTogether
(1)
This workflow is as simple as you can imagine! It can be used to remove the information tags in a fasta file and concat the sequence together
fastaURL : the input fasta reads file location
seqURL : the outcome sequence file location
wholeSeq : the output sequence as an entire string
Created: 2012-05-04
| Last updated: 2012-05-04
Credits:
BioCo Consultants
Workflow
generateWholeSeqAnnotation
(1)
This work flow is used for genereating all the known genes together to annotate a whole or a large region of genome sequence.
outputfilrURL: the location of the output file
Ginumber: the input gi gene number
wholeGenomeSeq: the whold sequence annotation information
output: the output of genbank text
Created: 2012-05-04
| Last updated: 2012-05-04
Credits:
BioCo Consultants
Workflow
Get top blastx hit of a list of contigs
(1)
This workflow takes a contigs.fasta file , gets all the ORF's present in it , runs blastx on each ORF, gets the FASTA file of the top blastX hit and its GI number.
Created: 2012-05-04
| Last updated: 2012-05-04
Credits:
BioCo Consultants