User: Kieren Lythgow

Name: Kieren Lythgow

Joined: Wednesday 14 November 2007 11:48:09 (UTC)

Last seen: Wednesday 20 July 2011 16:06:52 (UTC)

Email (public): Not specified

Website: http://kierenlythgow.wordpress.com

Location: Newcastle upon Tyne, United Kingdom

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3 Workflows

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Kieren Lythgow has been credited 3 times

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Field/Industry: Bionformatics & mitochondrial disease

Occupation/Role(s): PhD Student

Organisation(s):

Institute of Ageing & Health
Newcastle University

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Workflow

Taverna 1

Uploader

Kieren Lythgow

ELM Database Retrieval Workflow (1)

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This workflow retrieves all the current entries stored in the Eukaryotic Linear Motif (ELM) Database and returns all entries in a collated readable format. This requires the ELM Database retrieval WSDL file: http://elm.eu.org/webservice/ELMdb.wsdl

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: Kieren Lythgow

Workflow

Taverna 1

Uploader

Kieren Lythgow

Biomart Protein Sequence Retrieval (1)

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This workflow queries Biomart to retrieve the Ensembl gene id, protein id, gene name, description and amino acid sequence from the Ensembl Homo sapiens dataset. The user needs to specify a defined chromosomal region i.e. Chromo = 1, Start = 100000000, End = 250000000. This returns all unique entries in FASTA format.