Cn User: Peter Li

254?size=160x160

Name: Peter Li

Joined: Tuesday 13 November 2007 17:42:19 (UTC)

Last seen: Tuesday 20 May 2014 13:06:42 (UTC)

Email (public): Not specified

Website: Not specified

Location: Hong Kong, China

Peter Li has been credited 140 times

Peter Li has an average rating of:

4.5 / 5

(2 ratings in total)

for their items

Still enjoys eating at buffet restaurants. Currently, sampling the cuisine that Hong Kong has to offer. Need to be careful and watch my weight though.


Other contact details:

Not specified

Interests:

Systems biology, cheminformatics.

Field/Industry: Government agency

Occupation/Role(s): Data Organization Manager

Organisation(s):

BGI-Hong Kong

 

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Blob Using R Shell in Taverna workbench

Created: 2014-02-11 14:55:12 | Last updated: 2014-02-13 17:54:04

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we wil perform some simple statistical analyses using the RShell processor

File type: PowerPoint presentation

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Blob Using R service in Taverna - Introduction

Created: 2014-01-22 13:29:52

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to using R service in Taverna workflows.

File type: PowerPoint presentation

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Blob Test Data for Rservice Tutorial-Biodiversity

Created: 2014-01-19 14:38:17

Credits: User Aleksandra Pawlik User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test data for R service tutorial usage in Taverna.

File type: Excel workbook

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Blob Test Data for Rservice Tutorial

Created: 2013-09-02 18:24:22 | Last updated: 2013-11-27 15:25:50

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob RShell tutorial

Created: 2013-09-05 09:46:43

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RShell Tutorial by Peter Li - to be used for the workshop at Bonn University, 4-6 September 2013

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Blob Taverna microarray BMC Bioinformatics paper

Created: 2010-02-04 11:35:51

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Adobe PDF

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Blob GetVbiGlimmerOperationsInfo.xml

Created: 2008-07-13 09:40:31 | Last updated: 2008-07-13 20:55:18

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 49 times | Downloaded: 22 times

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Blob ListEmbossDatabases.xml

Created: 2008-07-13 09:45:07 | Last updated: 2008-07-13 20:54:47

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

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Blob EmblAccToEmblRecordUsingSeqret.xml

Created: 2008-07-13 09:49:28 | Last updated: 2008-07-13 20:54:21

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Comments: 0 | Viewed: 42 times | Downloaded: 21 times

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Blob AffyidToBlastnHtgoMus.xml

Created: 2008-07-13 09:55:47 | Last updated: 2008-07-13 20:53:51

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob AffyIdToGeneAnnoation(NFKBIE)_final.xml

Created: 2008-07-13 20:28:28

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob AffyidToGeneAnnotation10.xml

Created: 2008-07-13 20:27:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob AffyidToGeneAnnotation2.xml

Created: 2008-07-13 20:27:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Comments: 0 | Viewed: 62 times | Downloaded: 29 times

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Blob AffyidToGeneAnnotation3.xml

Created: 2008-07-13 20:26:13

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 56 times | Downloaded: 33 times

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Blob AffyidToGeneAnnotation4.xml

Created: 2008-07-13 20:25:33

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

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Blob AffyidToGeneAnnotationforPaper.xml

Created: 2008-07-13 20:24:51

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 54 times | Downloaded: 33 times

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Blob AffyidToGoGraph.xml

Created: 2008-07-13 20:24:03

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

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Blob AmbitTestWorkflow.xml

Created: 2008-07-13 10:24:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Comments: 0 | Viewed: 52 times | Downloaded: 28 times

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Blob AnilClustering.xml

Created: 2008-07-13 10:24:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob AnnotationPipelineForSEEK.xml

Created: 2008-07-13 10:23:34

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob AnnotationPipelineNoKeggForSEEK.xml

Created: 2008-07-13 10:22:54

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 24 times

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Blob ArrayExpressWF.xml

Created: 2008-07-13 10:17:02

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 26 times

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Blob BiomartAndEmboss.xml

Created: 2008-07-13 10:16:18

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 27 times

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Blob BlastNagainstDDBJatDDBJ.xml

Created: 2008-07-13 10:15:29

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 27 times

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Blob BlastagainstPDBatDDBJ.xml

Created: 2008-07-13 10:14:49

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 41 times | Downloaded: 23 times

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Blob EmblAccToGoIds.xml

Created: 2008-07-13 10:14:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 42 times | Downloaded: 28 times

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Blob EmblAccToKeggGeneEntry.xml

Created: 2008-07-13 10:13:29

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob EmblAccToKeggPathway3.xml

Created: 2008-07-13 10:12:53

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob EmblAccToKeggPathwayForPaper.xml

Created: 2008-07-13 10:12:08

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 40 times | Downloaded: 22 times

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Blob GDMageIds.xml

Created: 2008-07-13 10:11:28

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 23 times

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Blob GeneAnnotationIsmb.xml

Created: 2008-07-13 10:10:47

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 24 times

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Blob GetArrayDataUrl.xml

Created: 2008-07-13 10:10:12

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 23 times

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Blob GetEmblRecord.xml

Created: 2008-07-13 10:08:56

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 26 times

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Blob GetEmblRecord2.xml

Created: 2008-07-13 10:08:14

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 24 times

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Blob GetSwissProtRecord.xml

Created: 2008-07-13 10:07:39

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 27 times

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Blob GoGraph.xml

Created: 2008-07-13 10:07:03

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 24 times

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Blob InterProScanSample.xml

Created: 2008-07-13 10:06:24

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob KeggPathwayIdToPathwayMap.xml

Created: 2008-07-13 10:05:48

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob NFKBIE_AFFYID_TO_ANNOTATION.xml

Created: 2008-07-13 10:05:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob NFKBIE_AFFYID_TO_ANNOTATION_alternate.xml

Created: 2008-07-13 10:04:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob SNPBasedAnnotation.xml

Created: 2008-07-13 10:02:42

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob SNPBasedAnnotationWithAlternate.xml

Created: 2008-07-13 10:01:38

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob SnpIdToComplexAnnotation.xml

Created: 2008-07-13 10:00:37

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob SnpIdToComplexAnnotationWithGo.xml

Created: 2008-07-13 09:59:58

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob biomoby.xml

Created: 2008-07-13 09:59:20

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob getExperimentIds.xml

Created: 2008-07-13 09:58:46

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob interproscan.xml

Created: 2008-07-13 09:58:14

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 32 times

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Blob interproscanForGeneAnnotation.xml

Created: 2008-07-13 09:57:31

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob seqvista.xml

Created: 2008-07-13 09:56:57

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob workflow.xml

Created: 2008-07-13 09:56:22

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 41 times | Downloaded: 31 times

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Blob AffyidToBlastxPDB.xml

Created: 2008-07-13 09:55:12

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 28 times

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Blob AffyidToEmblRecord.xml

Created: 2008-07-13 09:53:59

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 32 times

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Blob AffyidToFastaSequence.xml

Created: 2008-07-13 09:53:17

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 24 times

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Blob AffyidToGeneAnnotationPipeline1.xml

Created: 2008-07-13 09:52:36

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 25 times

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Blob AffyidToMedlineIds.xml

Created: 2008-07-13 09:52:02

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob AffyidToMedlineRecords.xml

Created: 2008-07-13 09:51:23

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob AffyidToProteinAnnotationPipeline.xml

Created: 2008-07-13 09:50:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob EmblAccToEmblRecordUsingDDBJ.xml

Created: 2008-07-13 09:50:06

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 22 times

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Blob EmblAccToEmblRecordUsingXEMBL.xml

Created: 2008-07-13 09:47:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 25 times

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Blob EmblAccToKeggPathway2.xml

Created: 2008-07-13 09:46:57

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 25 times

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Blob KeggDatabaseNameToDatabaseInfo.xml

Created: 2008-07-13 09:46:22

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 23 times

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Blob KeggPathwayIdToGeneEntries.xml

Created: 2008-07-13 09:45:46

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 24 times

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Blob ListKeggGenomes.xml

Created: 2008-07-13 09:44:30

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 24 times

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Blob EmblAccToPredictArabidopsisGenes.xml

Created: 2008-07-13 09:43:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 41 times | Downloaded: 25 times

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Blob GetCondorBlastOperationInfo.xml

Created: 2008-07-13 09:43:06

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 43 times | Downloaded: 24 times

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Blob GetCondorblastInfo.xml

Created: 2008-07-13 09:42:01 | Last updated: 2008-07-13 09:42:31

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 27 times

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Blob GetPathportInterproOperationsInfo.xml

Created: 2008-07-13 09:41:16

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 23 times

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Blob GetVbiGlimmerServiceOperationInfo.xml

Created: 2008-07-13 09:39:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 45 times | Downloaded: 28 times

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Blob GetVbidasGenomeInfo.xml

Created: 2008-07-13 09:39:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 26 times

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Blob GetVbidasOperationsInfo.xml

Created: 2008-07-13 09:38:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 22 times

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Blob KeggDbinfo.xml

Created: 2008-07-13 09:37:19 | Last updated: 2008-07-13 09:37:56

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 27 times

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Blob AffyidToGeneAnnotationnoGOIDandPepstats.xml

Created: 2008-07-13 09:32:53 | Last updated: 2008-07-13 09:33:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 50 times | Downloaded: 27 times

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Workflow

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Workflow Visualize PAV provenance as SVG (1)

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2014-05-20

Credits: User Peter Li

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Workflow Workflow constructed from history 'reprodu... (1)

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No description

Created: 2014-02-19 | Last updated: 2014-02-19

Credits: User Peter Li

Workflow

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Workflow galaxy_101 (2)

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  This is a Galaxy pipeline written using the Galaxy 101 tutorial (https://main.g2.bx.psu.edu/galaxy101). The pipeline involves retrieving genome and SNP data from UCSC for a particular chromosome. These data are integrated in order to find exons with the highest number of SNPs.

Created: 2012-06-13 | Last updated: 2012-06-14

Credits: User Peter Li

Workflow

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Workflow Quality control processing of GEO datasets (2)

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The workflow performs a quality control process on gene expression data sets stored in the Gene Expression Omnibus database. The QC process is performed using Bioconductor R packages. A variety of statistics are produced by the workflow including a diagnostic plot from snm normalisation and nucleotide composition bias.

Created: 2011-04-06 | Last updated: 2011-04-11

Credits: User Peter Li User Bhmecham

Workflow

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Workflow BioXSD example workflow (1)

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An attempt to implement in the BioXSD workflow described by Kalas et al., (2010) Bioinformatics 26:i540-6. The workflow only calls one BioXSD web service (BLAST) since the second service (ClustalW) in the example workflow is currently down :(

Created: 2010-10-12 | Last updated: 2010-10-12

Credits: User Peter Li

Workflow

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Workflow Generate CombiUgi library (1)

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Generates a CombiUgi library using data from a Goolgle spreadsheet containing smiles strings of compounds to undergo virtual Ugi reactions

Created: 2010-08-10 | Last updated: 2010-08-10

Credits: User Peter Li User Romney

Workflow

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Workflow Predict Abraham descriptors (1)

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Predicts descriptor values using a model derived from a linear regression analysis of the Open Notebook Science solubility data and literature values. The workflow returns all the Abraham descriptors E, S, A, B and V in a HTML file.Predicts descriptor values using a model derived from a linear regression analysis of the Open Notebook Science solubility data and literature values

Created: 2010-08-05 | Last updated: 2010-08-05

Credits: User Peter Li

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Workflow Predict chemical solubility in solvents (2)

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Predicts solubility in molar units for a given chemical compound represented as a SMILES string in a given solvent. Uses a beanshell script to enable the user to select the solvent from a list.

Created: 2010-08-04 | Last updated: 2010-08-04

Credits: User Peter Li

Workflow

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Workflow download (2)

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Given a list key, prepare for download a file containing those records in the selected format. The original workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/).

Created: 2010-07-16 | Last updated: 2010-07-16

Credits: User Peter Li

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Workflow smiles-identity-idlist (1)

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Searches for similar structures in PubChem to an input SMILES string. This workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/).

Created: 2010-07-16 | Last updated: 2010-07-16

Credits: User Peter Li

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Workflow file-similarity-entrez-url (2)

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Performs a 2D structure similarity search on PubChem. The input structure has to be in the form of a SDF file. The original SDF-based similarity search workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/).

Created: 2010-07-16 | Last updated: 2010-07-16

Credits: User Peter Li

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Workflow Simple search (1)

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Performs a lite search on ChemSpider

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Search structures in ChEBI database (1)

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 Does a substructure, similarity or identity search using a structure in the Chebi database

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get ontology children (1)

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Retrieves the ontology children of an entity including the relationship type, using the ChEBI identifier.

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get ontology parents (1)

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Retrieves the ontology parents of an entity including the relationship type, using the ChEBI identifier.

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get complete entity by list (1)

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Returns information from the chebi database for a list of chebi identifiers

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get complete chebi entity (1)

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Returns informations for a given compound represented by its chebi identifier

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Asynchronous chemspider search by formula (1)

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Performs an asynchronous search on ChemSpider by molecular formula

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow getLiteEntity (1)

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Retrieves a list of "lite" entities containing only the ChEBI ASCII name and ChEBI identifier. The input parameters are a search string and a search category. If the search category is null then it will search under all fields. The search string accepts the wildcard character "*" and also unicode characters. You can get maximum results upto 5000 entries at a time.

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow chemspider identifier to MOL format (1)

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Returns the MOL file for a given compound represented by its chemspider identifier

Created: 2010-07-13

Credits: User Peter Li

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Workflow Get structure synonyms (1)

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Returns synonyms for a given compound represented by a MOL fileReturns synonyms for a given compound

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get compound thumbnail (1)

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Returns a small image of the 2D structure of given chemical compound represented by its chemspider identifier

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get compound information (1)

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Returns information about a given compound represented by its chemspider id

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Asynchronous chemspider simple search (1)

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Performs an asynchronous simple search on ChemSpider

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get spectrum information (1)

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Returns information about a spectrum identified by its chemspider spectrum identifier

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get compound spectra information (1)

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Returns information about spectra stored in ChemSpider for a given compound represented by its chemspider identifier

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get spectra information (1)

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Returns information about the spectra stored in ChemSpider

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: User Peter Li

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Workflow Get ChemSpider record in MOL format (1)

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Returns ChemSpider record in MOL format or empty string in case of failure.

Created: 2010-07-12 | Last updated: 2010-07-12

Credits: User Peter Li

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Workflow Get extended compound information for a li... (1)

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 Returns information for a given list of chemspider compound identifiers.

Created: 2010-07-12 | Last updated: 2010-07-12

Credits: User Peter Li

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Workflow Get extended compound information (1)

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Returns information from chemspider for a given chemical represented by its chemspider identifier

Created: 2010-07-12 | Last updated: 2010-07-12

Credits: User Peter Li

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Workflow Get list of chemspider databases (1)

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Returns a list of databases catalogedReturns a list of databases cataloged by ChemSpider

Created: 2010-07-12 | Last updated: 2010-07-12

Credits: User Peter Li

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Workflow Convert chemical identifier (1)

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Converts a chemical compound identifier from one format to another using the open babel web service provided by ChemSpider

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow SmilesToInchi (1)

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Convert SMILES to InChI. Result is v1.02s InChI.

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow MolToInchiKey (1)

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Converts a MOL file to an InChIKey. Result is v1.02s InChIKey.

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow MolToInchiString (1)

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Converts a MOL file to InChI. Result is v1.02s InChI.

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow isValidInChiKey (1)

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Checks that specified argument is valid InChIKey. Works for v1.02b InChIKey only.

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow InchiStringToSmiles (1)

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Converts an inchi string into SMILES format

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow InChIStringToMolFile (1)

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Converts an InChI string into a MOL file using the Inchi ChemSpider web service

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow InChIStringToInChiKey (1)

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Converts an InChI string to an InChi key

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow InChIToCSID (1)

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Convert InChI to ChemSpider ID

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow InChi key to MOL file (1)

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Returns a MOL file for a given InChi key

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow InChi key to Inchi string (1)

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Converts an InChI key to an InChI string using the ChemSpider Inchi web service.

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow InChi key to ChemSpider identifier (1)

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Returns Converts an InChIKey to a ChemSpider ID

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow Generate InChi key (1)

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Generates an inchi key for a given compound using the inchi web service provided by ChemSpider

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow Generate inChi information (1)

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Uses the GenerateInchiInfo web service operation from ChemSpider to generate information relating to the InChi string for a given chemical compound

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow Generate inChi (1)

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Generates an inChi string for a given chemical represented by its SMILES string, SDF or MOL file using the inchi web service provided by ChemSpider

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow AlitoraKDAInputModule test workflow (1)

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 This workflow calls the AlitoraKDAInputModule service from the test GenePattern server.

Created: 2010-07-07 | Last updated: 2010-07-07

Credits: User Peter Li

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Workflow Select items from list (1)

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This workflow pops up a window containing an input list of strings. The user is invited to select one or more strings for downstream processing.

Created: 2010-03-30

Credits: User Peter Li

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Workflow Copasi time simulation of SBML model (1)

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Uses the synchronous Copasi time simulation web service to predict the concentrations of species over a time period. The results from Copasi are provided in SBRML format which is visualised as a graph using an R script.

Created: 2010-03-26

Credits: User Peter Li

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Workflow SBML model optimisation (1)

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This workflow modifies reaction kinetic parameters against experimental data stored in the MCISB key results database

Created: 2010-03-26

Credits: User Peter Li

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Workflow SBML model parameterisation (1)

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This workflow parameterises an SBML model generated by the qualitative SBML model construction workflow

Created: 2010-03-26

Credits: User Peter Li

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Workflow Construction of skeleton SBML model using ... (1)

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This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given subsystem term.

Created: 2010-03-26 | Last updated: 2010-03-26

Credits: User Peter Li

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Workflow Construction of skeleton SBML model using ... (1)

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This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers

Created: 2010-03-26 | Last updated: 2010-03-26

Credits: User Peter Li

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Workflow Invocation of Gene Pattern modules using R (1)

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 A workflow to invoke a Gene Pattern module using an R script. Note that a FTP URL for the data to be analysed is required, not the data itself!

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: User Peter Li

Workflow

Workflow Pathways and Gene annotations for Arabidop... (2)

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This workflow searches for genes obtained from affy_ath1 affymetrix probeset identifiers. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.

Created: 2009-03-06 | Last updated: 2009-12-03

Credits: User Paul Fisher User Peter Li

Attributions: Workflow Pathways and Gene annotations for QTL region

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Workflow AffyidToGeneAnnotationnoGOIDandPepstats.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Peter Li

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Workflow Identification of differential genes using... (1)

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This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data which are then analysed by the LIMMA Bioconductor package in an R script. This produces a list of significant differentially expressed genes which is then analysed using the Go Term Finder tool to generate a PDF report of the common GO terms associated with the genes. A CSV file containing the list of sign...

Created: 2008-07-02 | Last updated: 2008-07-02

Credits: User Peter Li

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Workflow Identification of differential genes using... (2)

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This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data for analysis using t-tests by R. A list of significant differentially expressed genes is then analysed using the Go Term Finder tool which generates a list of GO terms associated with the genes. A CSV file containing the list of significant genes is also generated.

Created: 2008-04-15 | Last updated: 2008-07-01

Credits: User Peter Li

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Workflow selectworker (1)

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This workflow shows how the selectData beanshell script can be used to select items from a given list for analysis by downstream processors. Use Control and left mouse click to select multiple items.

Created: 2008-03-25 | Last updated: 2008-03-25

Credits: User Peter Li

Workflow

Workflow Gene annotation pipeline for the Graves di... (2)

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This is a revised workflow for the Graves disease scenario gene annotation pipeline used in the myGrid project. The workflow had to be re-written due to the loss of the services invoked in the original workflow.

Created: 2007-10-03 | Last updated: 2007-11-22

Credits: User Katy Wolstencroft User Peter Li

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Workflow Query Maxd microarray database (1)

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Retrieves data from the maxd database given name of data set

Created: 2007-11-14 | Last updated: 2007-11-22

Credits: User Peter Li

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Workflow Mapping microarray data onto metabolic pat... (1)

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This workflow maps microarray data onto metabolic pathway diagrams represented as SBML models drawn using Cell Designer. To run this workflow requires libsbml to be installed into taverna - see http://www.mcisb.org/software/taverna/libsbml/index.html

Created: 2007-11-14 | Last updated: 2007-11-22

Credits: User Peter Li

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Workflow Calculating frequencies of gene expression... (1)

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This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script

Created: 2010-03-15

Credits: User Peter Li

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Workflow Visualise KDA output data with Cytoscape (2)

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This workflow retrieves a data file on a web server directory and launches Cytoscape to visualise it.

Created: 2010-03-18 | Last updated: 2010-03-18

Credits: User Peter Li

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Workflow Test workflow for logging into Alitora and... (1)

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No description

Created: 2010-03-17

Credits: User Peter Li

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Workflow Log out from Alitora system (1)

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A nested workflow to be used for logging out of Alitora

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: User Peter Li

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Workflow Log into Alitora system (1)

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A nested workflow to be used for logging into Alitora

Created: 2010-03-17

Credits: User Peter Li

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Workflow Sage bionetwork demo workflow (1)

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This workflow performs key driver analysis and displays the results in Cytoscape.

Created: 2010-03-22

Credits: User Peter Li

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