User: Andrea

Name: Andrea

Joined: Friday 09 January 2009 10:38:27 (UTC)

Last seen: Wednesday 04 November 2009 11:01:27 (UTC)

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Website: http://www.sgtp.net/AndreaSplendiani/

Location: Harpenden, United Kingdom

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Very simple script to fix pathway commons biopax files

Created: 2009-11-04 11:05:46

Credits: Andrea

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This very simple script (it only replace one type of ID!) will fix BioPAX files coming from PathwayCommons. In this files, rdf:ID is used instead of rdf:about, and since these files contains repetition, this results in an error in strict parsers. This error gets undetected in many system as they disable replicated ID checking for performance, but it's still a problem in some.

File type: application/x-perl

Comments: 0 | Viewed: 39 times | Downloaded: 33 times

Tags:

biopax; rdf

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