User: Ahmetz

Name: Ahmetz

Joined: Wednesday 06 April 2011 19:30:04 (UTC)

Last seen: Wednesday 06 April 2011 19:31:18 (UTC)

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Taverna 1

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Paul Fisher

Human Microarray Analysis (1)

This workflow takes in probesets from and AffyMetrix Affy HG U133A micorarray experiment and returns: genes ; gene start and end positions; chromosome where genes reside; ensembl trasncripts; SwissProt ids. The final output of the workflow is a list of candidate pathways which are linked to the genes expressed in the microarray data. Example input for this workflow is: 212283_at 221634_at 220399_at

Created: 2008-02-08 | Last updated: 2009-12-03

Credits: Paul Fisher

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Workflow

Taverna 1

Uploader

Paul Fisher

HUMAN Microarray CEL file to candidate pat... (4)

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This workflow takes in a CEL file and a normalisation method then returns a series of images/graphs which represent the same output obtained using the MADAT software package (MicroArray Data Analysis Tool) [http://www.bioinf.manchester.ac.uk/MADAT/index.html]. Also returned by this workflow are a list of the top differentialy expressed genes (size dependant on the number specified as input - geneNumber), which are then used to find the candidate pathways which may be influencing the observed ...

Created: 2007-10-03 | Last updated: 2009-11-26

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